Mercurial > repos > blankenberg > data_manager_fetch_genome_all_fasta

diff data_manager_conf.xml @ 1:6115872b2240

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Add Fetch Genome / all_fasta.loc Data Manager.
author Daniel Blankenberg <dan@bx.psu.edu>
date Tue, 14 May 2013 16:28:15 -0400
parents
children ca8b3709309e
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/data_manager_conf.xml	Tue May 14 16:28:15 2013 -0400
@@ -0,0 +1,21 @@
+<?xml version="1.0"?>
+<data_managers>
+    
+    <data_manager tool_file="data_manager/data_manager_fetch_genome_all_fasta.xml" id="fetch_genome_all_fasta">
+        <data_table name="all_fasta">
+            <output>
+                <column name="value" />
+                <column name="dbkey" />
+                <column name="name" />
+                <column name="path" output_ref="out_file" >
+                    <move type="file">
+                        <source>${path}</source>
+                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/seq/${path}</target>
+                    </move>
+                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/seq/${path}</value_translation>
+                </column>
+            </output>
+        </data_table>
+    </data_manager>
+    
+</data_managers>