Mercurial > repos > blankenberg > data_manager_example_blastdb_ncbi_update_blastdb

diff data_manager_conf.xml @ 0:c88d28377bd1 default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Create an example blastdb Data Manager.
author Daniel Blankenberg <dan@bx.psu.edu>
date Wed, 11 Dec 2013 16:24:11 -0500
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/data_manager_conf.xml	Wed Dec 11 16:24:11 2013 -0500
@@ -0,0 +1,18 @@
+<?xml version="1.0"?>
+<data_managers>
+    <data_manager tool_file="data_manager/blastdb.xml" id="ncbi_blast_plus_update_blastdb">
+        <data_table name="blastdb">
+            <output>
+                <column name="value" />
+                <column name="name" />
+                <column name="path" output_ref="out_file" >
+                    <move type="directory">
+                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">blastdb/${path}</target>
+                    </move>
+                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/blastdb/${path}/${nucleotide_alias_name}</value_translation>
+                    <value_translation type="function">abspath</value_translation>
+                </column>
+            </output>
+        </data_table>
+    </data_manager>
+</data_managers>