Mercurial > repos > blankenberg > data_manager_example_blastdb_ncbi_update_blastdb
annotate data_manager_conf.xml @ 0:c88d28377bd1 default tip
Create an example blastdb Data Manager.
author | Daniel Blankenberg <dan@bx.psu.edu> |
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date | Wed, 11 Dec 2013 16:24:11 -0500 |
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Create an example blastdb Data Manager.
Daniel Blankenberg <dan@bx.psu.edu>
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1 <?xml version="1.0"?> |
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Create an example blastdb Data Manager.
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2 <data_managers> |
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3 <data_manager tool_file="data_manager/blastdb.xml" id="ncbi_blast_plus_update_blastdb"> |
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4 <data_table name="blastdb"> |
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5 <output> |
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Create an example blastdb Data Manager.
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6 <column name="value" /> |
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Create an example blastdb Data Manager.
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7 <column name="name" /> |
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Create an example blastdb Data Manager.
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8 <column name="path" output_ref="out_file" > |
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Create an example blastdb Data Manager.
Daniel Blankenberg <dan@bx.psu.edu>
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9 <move type="directory"> |
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10 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">blastdb/${path}</target> |
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Create an example blastdb Data Manager.
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11 </move> |
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Create an example blastdb Data Manager.
Daniel Blankenberg <dan@bx.psu.edu>
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12 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/blastdb/${path}/${nucleotide_alias_name}</value_translation> |
c88d28377bd1
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Daniel Blankenberg <dan@bx.psu.edu>
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13 <value_translation type="function">abspath</value_translation> |
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Create an example blastdb Data Manager.
Daniel Blankenberg <dan@bx.psu.edu>
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14 </column> |
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Create an example blastdb Data Manager.
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15 </output> |
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Create an example blastdb Data Manager.
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16 </data_table> |
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Create an example blastdb Data Manager.
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17 </data_manager> |
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Create an example blastdb Data Manager.
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18 </data_managers> |