annotate readme.rst @ 0:7c2ef0170f03 draft default tip

planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
author bgruening
date Sat, 04 Jun 2016 12:44:06 -0400
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
1 ==========================================
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
2 Galaxy wrapper for VT the Variant Tool Set
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
3 ==========================================
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
4
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
5 A tool set for short variant discovery in genetic sequence data.
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
6
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
7 http://genome.sph.umich.edu/wiki/vt
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
8
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
9 ============
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
10 Installation
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
11 ============
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
12
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
13 It is recommended to install this wrapper via the `Galaxy Tool Shed`.
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
14
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
15 .. _`Galaxy Tool Shed`: https://testtoolshed.g2.bx.psu.edu/view/iuc/vt
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
16
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
17
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
18 =======
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
19 History
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
20 =======
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
21 - 0.1: Initial public release
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
22
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
23
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
24 ====================
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
25 Detailed description
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
26 ====================
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
27
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
28 View the original GEMINI documentation: http://genome.sph.umich.edu/wiki/vt
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
29
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
30
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
31 ===============================
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
32 Wrapper Licence (MIT/BSD style)
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
33 ===============================
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
34
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
35 Permission to use, copy, modify, and distribute this software and its
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
36 documentation with or without modifications and for any purpose and
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
37 without fee is hereby granted, provided that any copyright notices
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
38 appear in all copies and that both those copyright notices and this
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
39 permission notice appear in supporting documentation, and that the
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
40 names of the contributors or copyright holders not be used in
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
41 advertising or publicity pertaining to distribution of the software
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
42 without specific prior permission.
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
43
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
44 THE CONTRIBUTORS AND COPYRIGHT HOLDERS OF THIS SOFTWARE DISCLAIM ALL
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
45 WARRANTIES WITH REGARD TO THIS SOFTWARE, INCLUDING ALL IMPLIED
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
46 WARRANTIES OF MERCHANTABILITY AND FITNESS, IN NO EVENT SHALL THE
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
47 CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY SPECIAL, INDIRECT
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
48 OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
49 OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
50 OR OTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
51 OR PERFORMANCE OF THIS SOFTWARE.
7c2ef0170f03 planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff changeset
52