Mercurial > repos > bgruening > vt_normalize
annotate readme.rst @ 0:7c2ef0170f03 draft default tip
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
| author | bgruening |
|---|---|
| date | Sat, 04 Jun 2016 12:44:06 -0400 |
| parents | |
| children |
| rev | line source |
|---|---|
|
0
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
1 ========================================== |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
2 Galaxy wrapper for VT the Variant Tool Set |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
3 ========================================== |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
4 |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
5 A tool set for short variant discovery in genetic sequence data. |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
6 |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
7 http://genome.sph.umich.edu/wiki/vt |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
8 |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
9 ============ |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
10 Installation |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
11 ============ |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
12 |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
13 It is recommended to install this wrapper via the `Galaxy Tool Shed`. |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
14 |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
15 .. _`Galaxy Tool Shed`: https://testtoolshed.g2.bx.psu.edu/view/iuc/vt |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
16 |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
17 |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
18 ======= |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
19 History |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
20 ======= |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
21 - 0.1: Initial public release |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
22 |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
23 |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
24 ==================== |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
25 Detailed description |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
26 ==================== |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
27 |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
28 View the original GEMINI documentation: http://genome.sph.umich.edu/wiki/vt |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
29 |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
30 |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
31 =============================== |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
32 Wrapper Licence (MIT/BSD style) |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
33 =============================== |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
34 |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
35 Permission to use, copy, modify, and distribute this software and its |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
36 documentation with or without modifications and for any purpose and |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
37 without fee is hereby granted, provided that any copyright notices |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
38 appear in all copies and that both those copyright notices and this |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
39 permission notice appear in supporting documentation, and that the |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
40 names of the contributors or copyright holders not be used in |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
41 advertising or publicity pertaining to distribution of the software |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
42 without specific prior permission. |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
43 |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
44 THE CONTRIBUTORS AND COPYRIGHT HOLDERS OF THIS SOFTWARE DISCLAIM ALL |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
45 WARRANTIES WITH REGARD TO THIS SOFTWARE, INCLUDING ALL IMPLIED |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
46 WARRANTIES OF MERCHANTABILITY AND FITNESS, IN NO EVENT SHALL THE |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
47 CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY SPECIAL, INDIRECT |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
48 OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
49 OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
50 OR OTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
51 OR PERFORMANCE OF THIS SOFTWARE. |
|
7c2ef0170f03
planemo upload for repository https://github.com/atks/vt commit 5f1e53104d11817b9f1f93c4df17b77c80bd7472-dirty
bgruening
parents:
diff
changeset
|
52 |
