# HG changeset patch # User bgruening # Date 1750595139 0 # Node ID e08b21abb96d66464ab2aee79992f7d1e11c2158 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/vpt commit 16e04b2423dc0380a47243fb15bfd120dd95dedc diff -r 000000000000 -r e08b21abb96d macros.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/macros.xml Sun Jun 22 12:25:39 2025 +0000 @@ -0,0 +1,147 @@ + + 1.3.0 + 2 + 23.0 + + + quay.io/bgruening/vpt:1.3.0-1 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+ +
+ + + + advanced_output['log'] + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + @Manual{github, + title = {Vizgen Post-processing Tool}, + author = {Vizgen}, + organization = {Vizgen}, + year = {2022}, + url = {https://github.com/Vizgen/vizgen-postprocessing}} + + + + diff -r 000000000000 -r e08b21abb96d vpt_extract.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/vpt_extract.xml Sun Jun 22 12:25:39 2025 +0000 @@ -0,0 +1,85 @@ + + image patches + + macros.xml + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+ +
+ + + + + + + + + +The Vizgen Post-processing Tool (VPT) is a scalable and reproducible tool which enables users to reprocess and refine the single-cell results of MERSCOPE experiments. + +The extract-image-patch tool extracts a patch from the mosaic image at the specified coordinates and size. The patch is saved as a PNG image. It can be used for manual segmentation or for training machine learning models. + + + \ No newline at end of file