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comparison tool_dependencies.xml @ 5:42c29d1051e8

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Uploaded
author bgruening
date Thu, 23 May 2013 04:03:55 -0400
parents 9c79d74d23ef
children 035f845a6edc
comparison
equal deleted inserted replaced
4:9c79d74d23ef 5:42c29d1051e8
1 <?xml version="1.0"?>
2 <tool_dependency> 1 <tool_dependency>
3 <package name="openbabel" version="2.3.2"> 2 <package name="openbabel" version="2.3.2">
4 <repository changeset_revision="efffcee80e03" name="package_openbabel_2_3" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> 3 <repository name="package_openbabel_2_3" owner="bgruening" prior_installation_required="True" />
5 </package> 4 </package>
6 <package name="graphicsmagick" version="1.3.18"> 5 <package name="graphicsmagick" version="1.3.18">
7 <repository changeset_revision="34f511310435" name="package_graphicsmagick_1_3" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> 6 <repository name="package_graphicsmagick_1_3" owner="bgruening" prior_installation_required="True" />
8 </package> 7 </package>
9 <package name="osra" version="2.0.0"> 8 <package name="osra" version="2.0.0">
10 <install version="1.0"> 9 <install version="1.0">
11 <actions> 10 <actions>
12 11 <!-- first action is always downloading -->
13 <action type="download_by_url">http://downloads.sourceforge.net/project/osra/osra/2.0.0/osra-2.0.0.tgz</action> 12 <action type="download_by_url">http://downloads.sourceforge.net/project/osra/osra/2.0.0/osra-2.0.0.tgz</action>
14 13
15 14 <!-- populate the environment variables from the dependend repos -->
16 <action type="set_environment_for_install"> 15 <action type="set_environment_for_install">
17 <repository changeset_revision="efffcee80e03" name="package_openbabel_2_3" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu"> 16 <repository name="package_openbabel_2_3" owner="bgruening">
18 <package name="openbabel" version="2.3.2" /> 17 <package name="openbabel" version="2.3.2" />
19 </repository> 18 </repository>
20 <repository changeset_revision="34f511310435" name="package_graphicsmagick_1_3" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu"> 19 <repository name="package_graphicsmagick_1_3" owner="bgruening">
21 <package name="graphicsmagick" version="1.3.18" /> 20 <package name="graphicsmagick" version="1.3.18" />
22 </repository> 21 </repository>
23 </action> 22 </action>
24 23
25 24 <!--compiling potrace-1.11 -->
26 <action type="shell_command">wget http://potrace.sourceforge.net/download/potrace-1.11.tar.gz</action> 25 <action type="shell_command">wget http://potrace.sourceforge.net/download/potrace-1.11.tar.gz</action>
27 <action type="shell_command">tar xfvz potrace-1.11.tar.gz &amp;&amp; cd potrace-1.11 &amp;&amp; ./configure --with-libpotrace --prefix=$INSTALL_DIR/potrace/build &amp;&amp; make &amp;&amp; make install</action> 26 <action type="shell_command">tar xfvz potrace-1.11.tar.gz &amp;&amp; cd potrace-1.11 &amp;&amp; ./configure --with-libpotrace --prefix=$INSTALL_DIR/potrace/build &amp;&amp; make &amp;&amp; make install</action>
28 27
29 28 <!--compiling gocr 0.50patched -->
29 <!-- not yet possible
30 <action type="shell_command">wget http://www-e.uni-magdeburg.de/jschulen/ocr/gocr-0.50.tar.gz</action> 30 <action type="shell_command">wget http://www-e.uni-magdeburg.de/jschulen/ocr/gocr-0.50.tar.gz</action>
31 <action type="shell_command">tar xfvz gocr-0.50.tar.gz &amp;&amp; cd gocr-0.50 &amp;&amp; ./configure --prefix=$INSTALL_DIR/gocr/build &amp;&amp; make libs &amp;&amp; make all install</action> 31 <action type="shell_command">tar xfvz gocr-0.50.tar.gz &amp;&amp; cd gocr-0.50 &amp;&amp; ./configure --prefix=$INSTALL_DIR/gocr/build &amp;&amp; make libs &amp;&amp; make all install</action>
32 -->
33 <action type="shell_command">wget http://downloads.sourceforge.net/project/osra/gocr-patched/gocr-0.50pre-patched.tgz</action>
34 <action type="shell_command">tar xfvz gocr-0.50pre-patched.tgz &amp;&amp; cd gocr-0.50pre-patched &amp;&amp; ./configure --prefix=$INSTALL_DIR/gocr/build &amp;&amp; make libs &amp;&amp; make all install</action>
32 35
33 36
37 <!--compiling tclap 1.2.1 -->
34 <action type="shell_command">wget http://downloads.sourceforge.net/project/tclap/tclap-1.2.1.tar.gz</action> 38 <action type="shell_command">wget http://downloads.sourceforge.net/project/tclap/tclap-1.2.1.tar.gz</action>
35 <action type="shell_command">tar xfvz tclap-1.2.1.tar.gz &amp;&amp; cd tclap-1.2.1 &amp;&amp; ./configure --prefix=$INSTALL_DIR/tclap/build &amp;&amp; make &amp;&amp; make install</action> 39 <action type="shell_command">tar xfvz tclap-1.2.1.tar.gz &amp;&amp; cd tclap-1.2.1 &amp;&amp; ./configure --prefix=$INSTALL_DIR/tclap/build &amp;&amp; make &amp;&amp; make install</action>
36 40
37 41 <!--compiling ocrad 0.21 -->
38 <action type="shell_command">wget http://mirror.checkdomain.de/gnu/ocrad/ocrad-0.21.tar.gz</action> 42 <action type="shell_command">wget http://mirror.checkdomain.de/gnu/ocrad/ocrad-0.21.tar.gz</action>
39 <action type="shell_command">tar xfvz ocrad-0.21.tar.gz &amp;&amp; cd ocrad-0.21 &amp;&amp; ./configure --prefix=$INSTALL_DIR/ocrad/build &amp;&amp; make &amp;&amp; make install</action> 43 <action type="shell_command">tar xfvz ocrad-0.21.tar.gz &amp;&amp; cd ocrad-0.21 &amp;&amp; ./configure --prefix=$INSTALL_DIR/ocrad/build &amp;&amp; make &amp;&amp; make install</action>
40 44
41 45 <!--compiling cuneiform 1.1.0 -->
42 <action type="shell_command">wget https://launchpad.net/cuneiform-linux/1.1/1.1/+download/cuneiform-linux-1.1.0.tar.bz2</action> 46 <action type="shell_command">wget https://launchpad.net/cuneiform-linux/1.1/1.1/+download/cuneiform-linux-1.1.0.tar.bz2</action>
43 <action type="shell_command">tar xfvj cuneiform-linux-1.1.0.tar.bz2 &amp;&amp; cd cuneiform-linux-1.1.0 &amp;&amp; mkdir build &amp;&amp; cd build &amp;&amp; cmake .. -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR/cuneiform/build/ &amp;&amp; make &amp;&amp; make install</action> 47 <action type="shell_command">tar xfvj cuneiform-linux-1.1.0.tar.bz2 &amp;&amp; cd cuneiform-linux-1.1.0 &amp;&amp; mkdir build &amp;&amp; cd build &amp;&amp; cmake .. -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR/cuneiform/build/ &amp;&amp; make &amp;&amp; make install</action>
44 48
45 49 <!--And finally OSRA 1.4.0-->
46 50 <!-- Extending the PATH is needed for OSRA -->
47 <action type="shell_command">export PATH=$PATH:$GRAPHICSMAGICK_ROOT_DIR/bin/ &amp;&amp; ./configure --with-tclap-include=$INSTALL_DIR/tclap/build/include/ --with-potrace-include=$INSTALL_DIR/potrace/build/include/ --with-potrace-lib=$INSTALL_DIR/potrace/build/lib/ --with-gocr-include=$INSTALL_DIR/gocr/build/include/gocr/ --with-gocr-lib=$INSTALL_DIR/gocr/build/lib/ --with-ocrad-include=$INSTALL_DIR/ocrad/build/include/ --with-ocrad-lib=$INSTALL_DIR/ocrad/build/lib/ --with-cuneiform-include=$INSTALL_DIR/cuneiform/build/install/include/ --with-cuneiform --with-cuneiform-lib=$INSTALL_DIR/cuneiform/build/install/lib/ --with-openbabel-include=$OPENBABEL_INCLUDE_DIR/openbabel-2.0/ --with-openbabel-lib=$OPENBABEL_LIB_DIR --with-graphicsmagick-lib=$GRAPHICSMAGICK_ROOT_DIR/lib/ --with-graphicsmagick-include=$GRAPHICSMAGICK_ROOT_DIR/include/GraphicsMagick/ --prefix=$INSTALL_DIR </action> 51 <action type="shell_command">export PATH=$PATH:$GRAPHICSMAGICK_ROOT_DIR/bin/ &amp;&amp;
52 ./configure --with-tclap-include=$INSTALL_DIR/tclap/build/include/ --with-potrace-include=$INSTALL_DIR/potrace/build/include/ --with-potrace-lib=$INSTALL_DIR/potrace/build/lib/ --with-gocr-include=$INSTALL_DIR/gocr/build/include/gocr/ --with-gocr-lib=$INSTALL_DIR/gocr/build/lib/ --with-ocrad-include=$INSTALL_DIR/ocrad/build/include/ --with-ocrad-lib=$INSTALL_DIR/ocrad/build/lib/ --with-cuneiform-include=$INSTALL_DIR/cuneiform/build/install/include/ --with-cuneiform --with-cuneiform-lib=$INSTALL_DIR/cuneiform/build/install/lib/ --with-openbabel-include=$OPENBABEL_INCLUDE_DIR/openbabel-2.0/ --with-openbabel-lib=$OPENBABEL_LIB_DIR --with-graphicsmagick-lib=$GRAPHICSMAGICK_ROOT_DIR/lib/ --with-graphicsmagick-include=$GRAPHICSMAGICK_ROOT_DIR/include/GraphicsMagick/ --prefix=$INSTALL_DIR </action>
48 <action type="shell_command">make</action> 53 <action type="shell_command">make</action>
49 <action type="shell_command">make install</action> 54 <action type="shell_command">make install</action>
50 55
51 <action type="shell_command">rm $INSTALL_DIR/tclap/ -r</action> 56 <action type="shell_command">rm $INSTALL_DIR/tclap/ -r</action>
52 57 <!--<action type="shell_command">rm $INSTALL_DIR/openbabel/ -r</action>-->
53 <action type="shell_command">rm $INSTALL_DIR/gocr/ -r</action> 58 <action type="shell_command">rm $INSTALL_DIR/gocr/ -r</action>
54 <action type="shell_command">rm $INSTALL_DIR/ocrad/ -r</action> 59 <action type="shell_command">rm $INSTALL_DIR/ocrad/ -r</action>
55 <action type="shell_command">rm $INSTALL_DIR/cuneiform/ -r</action> 60 <action type="shell_command">rm $INSTALL_DIR/cuneiform/ -r</action>
56 61
57 <action type="set_environment"> 62 <action type="set_environment">
58 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$GRAPHICSMAGICK_ROOT_DIR/lib/</environment_variable> 63 <environment_variable name="LD_LIBRARY_PATH" action="prepend_to">$GRAPHICSMAGICK_ROOT_DIR/lib/</environment_variable>
59 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/potrace/build/lib/</environment_variable> 64 <environment_variable name="LD_LIBRARY_PATH" action="prepend_to">$INSTALL_DIR/potrace/build/lib/</environment_variable>
60 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> 65 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
61 66 <!-- OSRA_DATA_FILES is only used by the galaxy wrapper and is not part of OSRA -->
62 <environment_variable action="set_to" name="OSRA_DATA_FILES">$INSTALL_DIR/share</environment_variable> 67 <environment_variable name="OSRA_DATA_FILES" action="set_to">$INSTALL_DIR/share</environment_variable>
63 </action> 68 </action>
64 </actions> 69 </actions>
65 </install> 70 </install>
66 <readme>We still have a handfull of requirements</readme> 71 <readme>We still have a handfull of requirements</readme>
67 </package> 72 </package>