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comparison reverse.py @ 108:00a775971820 draft

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Uploaded
author bgruening
date Fri, 11 Apr 2014 18:14:57 -0400
parents f258fbfead4b
children 89dd3b812906
comparison
equal deleted inserted replaced
107:da57c348cbb0 108:00a775971820
7 7
8 DEBUG = False 8 DEBUG = False
9 9
10 def main(): 10 def main():
11 (options, args) = _parse_args() 11 (options, args) = _parse_args()
12 format_args = (options.input, options.output) 12 _run_shell("cat '%s' > '%s'" % (options.input, options.output))
13 _run_shell("cat '%s' > '%s'" % format_args) 13 _run_dbtoolkit("com.compomics.dbtoolkit.toolkit.ReverseFASTADB", "'%s' | head --lines -4 >> '%s'" % (options.input, options.output), options)
14 _run_dbtoolkit("com.compomics.dbtoolkit.toolkit.ReverseFASTADB", "'%s' | head --lines -4 >> '%s'" % \
15 format_args)
16 14
17 15
18 def _run_shell(command): 16 def _run_shell(command):
19 if DEBUG: 17 if DEBUG:
20 print "Running shell command %s" % command 18 print "Running shell command %s" % command