|
90
|
1 <tool id="scatterplot_rpy" name="Scatterplot" version="1.1.0">
|
|
|
2 <description>of two numeric columns</description>
|
|
|
3 <expand macro="requirements" />
|
|
|
4 <macros>
|
|
|
5 <import>statistic_tools_macros.xml</import>
|
|
|
6 </macros>
|
|
|
7 <command interpreter="python">scatterplot.py $input $out_file1 $col1 $col2 "$title" "$xlab" "$ylab"</command>
|
|
|
8 <inputs>
|
|
|
9 <param name="input" type="data" format="tabular" label="Dataset" help="Dataset missing? See TIP below"/>
|
|
|
10 <param name="col1" type="data_column" data_ref="input" numerical="True" label="Numerical column for x axis" />
|
|
|
11 <param name="col2" type="data_column" data_ref="input" numerical="True" label="Numerical column for y axis" />
|
|
|
12 <param name="title" size="30" type="text" value="Scatterplot" label="Plot title"/>
|
|
|
13 <param name="xlab" size="30" type="text" value="V1" label="Label for x axis"/>
|
|
|
14 <param name="ylab" size="30" type="text" value="V2" label="Label for y axis"/>
|
|
|
15 </inputs>
|
|
|
16 <outputs>
|
|
|
17 <data format="pdf" name="out_file1" />
|
|
|
18 </outputs>
|
|
|
19
|
|
|
20 <tests>
|
|
|
21 <test>
|
|
|
22 <param name="input" value="scatterplot_in1.tabular" ftype="tabular"/>
|
|
|
23 <param name="col1" value="2"/>
|
|
|
24 <param name="col2" value="3"/>
|
|
|
25 <param name="title" value="Scatterplot"/>
|
|
|
26 <param name="xlab" value="V1"/>
|
|
|
27 <param name="ylab" value="V2"/>
|
|
|
28 <output name="out_file1" file="scatterplot_out1.pdf" />
|
|
|
29 </test>
|
|
|
30 </tests>
|
|
|
31 <help>
|
|
|
32
|
|
|
33 .. class:: infomark
|
|
|
34
|
|
|
35 **TIP:** If your data is not TAB delimited, use *Text Manipulation->Convert*
|
|
|
36
|
|
|
37 -----
|
|
|
38
|
|
|
39 **Syntax**
|
|
|
40
|
|
|
41 This tool creates a simple scatter plot between two variables containing numeric values of a selected dataset.
|
|
|
42
|
|
|
43 - All invalid, blank and comment lines in the dataset are skipped. The number of skipped lines is displayed in the resulting history item.
|
|
|
44
|
|
|
45 - **Plot title** The scatterplot title
|
|
|
46 - **Label for x axis** and **Label for y axis** The labels for x and y axis of the scatterplot.
|
|
|
47
|
|
|
48 -----
|
|
|
49
|
|
|
50 **Example**
|
|
|
51
|
|
|
52 - Input file::
|
|
|
53
|
|
|
54 1 68 4.1
|
|
|
55 2 71 4.6
|
|
|
56 3 62 3.8
|
|
|
57 4 75 4.4
|
|
|
58 5 58 3.2
|
|
|
59 6 60 3.1
|
|
|
60 7 67 3.8
|
|
|
61 8 68 4.1
|
|
|
62 9 71 4.3
|
|
|
63 10 69 3.7
|
|
|
64
|
|
|
65 - Create a simple scatterplot between the variables in column 2 and column 3 of the above dataset.
|
|
|
66
|
|
|
67 .. image:: $PATH_TO_IMAGES/images/scatterplot.png
|
|
|
68
|
|
|
69 </help>
|
|
|
70 </tool>
|
