Mercurial > repos > bgruening > uniprot_rest_interface
diff uniprot.xml @ 2:4a416eb3bfcf draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/uniprot_rest_interface commit 074fed99c6df6bad17341bbfa57645f222907ad4
| author | bgruening |
|---|---|
| date | Mon, 10 Apr 2017 13:19:09 -0400 |
| parents | 357dc1f016f5 |
| children | f806bb47aff6 |
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--- a/uniprot.xml Fri Oct 14 15:42:50 2016 -0400 +++ b/uniprot.xml Mon Apr 10 13:19:09 2017 -0400 @@ -6,14 +6,8 @@ <requirements> <requirement type="package" version="2.7">requests</requirement> </requirements> - <stdio> - <exit_code range="1:" /> - <exit_code range=":-1" /> - <regex match="Error:" /> - <regex match="Exception:" /> - </stdio> <version_command>echo "UniProt ID mapping for Galaxy in version 0.1"</version_command> - <command><![CDATA[ + <command detect_errors="aggressive"><![CDATA[ cut -f ${id_column} $infile > id_file.tabular && @@ -237,14 +231,14 @@ <param name="id_column" value="c1"/> <param name="format" value="fasta"/> <param name="tool_choice" value="retrieve"/> - <output name="outfile_retrieve" file="test1_retrieve.fasta" ftype="fasta"/> + <output name="outfile_retrieve_fasta" file="test1_retrieve.fasta" ftype="fasta" compare="sim_size" /> </test> <test> <param name="infile" value="id_uniprot.tab" ftype="tabular"/> <param name="id_column" value="c1"/> <param name="format" value="gff"/> <param name="tool_choice" value="retrieve"/> - <output name="outfile_retrieve" file="test2_retrieve.gff" ftype="gff"/> + <output name="outfile_retrieve_gff" file="test2_retrieve.gff" ftype="gff" compare="sim_size" /> </test> <test> <param name="infile" value="id_uniprot.tab" ftype="tabular"/>