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comparison awk.xml @ 26:f22a309187a3 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit c2b1677d1c94433f777c2dc28ac8eec0a99cc6a7
author bgruening
date Fri, 16 Aug 2024 10:41:17 +0000
parents 5fef6d08de83
children 08cdbfffce67
comparison
equal deleted inserted replaced
25:cd83b5644eab 26:f22a309187a3
1 <tool id="tp_awk_tool" name="Text reformatting" version="@BASE_VERSION@.2"> 1 <tool id="tp_awk_tool" name="Text reformatting" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
2 <description>with awk</description> 2 <description>with awk</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="creator"/>
6 <requirements> 7 <requirements>
7 <requirement type="package" version="4.2.0">gawk</requirement> 8 <requirement type="package" version="5.3.0">gawk</requirement>
8 </requirements> 9 </requirements>
9 <version_command>awk --version | head -n 1</version_command> 10 <version_command>awk --version | head -n 1</version_command>
10 <command> 11 <command>
11 <![CDATA[ 12 <![CDATA[
12 env -i 13 env -i
13 \$(which awk) 14 \$(which awk)
14 --sandbox 15 --sandbox
15 -v FS=' ' 16 -v FS=' '
16 -v OFS=' ' 17 -v OFS=' '
17 --re-interval 18 --re-interval
18 -f "$awk_script" 19 -f '$awk_script'
19 "$infile" 20 '$infile'
20 > "$outfile" 21 > '$outfile'
21 ]]> 22 ]]>
22 </command> 23 </command>
23 <configfiles> 24 <configfiles>
24 <configfile name="awk_script">$code</configfile> 25 <configfile name="awk_script">$code</configfile>
25 </configfiles> 26 </configfiles>
117 - matches the beginning of a line or string. 118 - matches the beginning of a line or string.
118 - indicates negation in a character class. For example, [^...] matches every character except the ones inside brackets. 119 - indicates negation in a character class. For example, [^...] matches every character except the ones inside brackets.
119 - **$** matches the end of a line or string. 120 - **$** matches the end of a line or string.
120 - **\|** Separates alternate possibilities. 121 - **\|** Separates alternate possibilities.
121 122
122 @REFERENCES@
123 ]]> 123 ]]>
124 </help> 124 </help>
125 <expand macro="citations" /> 125 <expand macro="citations" />
126 </tool> 126 </tool>