comparison sorted_uniq.xml @ 0:ec66f9d90ef0 draft

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author bgruening
date Thu, 05 Sep 2013 04:58:21 -0400
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1 <tool id="unixtools_uniq_tool" name="Unique lines">
2 <description>from sorted file</description>
3 <requirements>
4 <requirement type="package" version="8.21">gnu_coreutils</requirement>
5 </requirements>
6 <command>
7 uniq
8 -f
9 $skipfields
10 $count
11 $repeated
12 $ignorecase
13 $uniqueonly
14 $input
15
16 ## feature is not yet released, it will be in the next 8.22 version
17 ##--group=$group
18 &gt; $output
19 </command>
20
21 <inputs>
22 <param format="txt" name="input" type="data" label="File to scan for unique values" help="Make sure you have sorted this file" />
23
24 <param name="count" type="boolean" label="count [-c]" help="Prefix lines by the number of occurrences" truevalue="-c" falsevalue="" />
25 <param name="repeated" type="boolean" label="repeated [-d]" help="Only print duplicate lines" truevalue="-d" falsevalue="" />
26 <param name="ignorecase" type="boolean" label="ignore case [-i]" help="Ignore differences in case when comparing" truevalue="-i" falsevalue="" />
27 <param name="uniqueonly" type="boolean" label="unique only [-u]" help="Only print unique lines" truevalue="-u" falsevalue="" />
28 <param name="skipfields" type="integer" label="skip fields [-f]" help="Avoid comparing the first N fields. (use zero to start from the first field)" size="2" value="0" />
29
30 <!--
31 <param name="group" type="select" label="Output all lines, and delimit each unique group.">
32 <option value="separate">Separate unique groups with a single delimiter</option>
33 <option value="prepend">Output a delimiter before each group of unique items</option>
34 <option value="append">Output a delimiter after each group of unique items.</option>
35 <option value="both">Output a delimiter around each group of unique items.</option>
36 </param>
37 -->
38 </inputs>
39
40 <outputs>
41 <data format="input" name="output" metadata_source="input"/>
42 </outputs>
43 <help>
44 This tool takes a sorted file and look for lines that are unique.
45
46 .. class:: warningmark
47
48 Please make sure your file is sorted, or else this tool will give you an erroneous output.
49
50 .. class:: infomark
51
52 You can sort your file using either the "Sort" tool in "Filter and Sort", or the "Sort" tool in "Unix Tools".
53
54 </help>
55 </tool>