Mercurial > repos > bgruening > text_processing
comparison sort_rows.xml @ 0:ec66f9d90ef0 draft
initial uploaded
| author | bgruening |
|---|---|
| date | Thu, 05 Sep 2013 04:58:21 -0400 |
| parents | |
| children | 7068d1548234 |
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| -1:000000000000 | 0:ec66f9d90ef0 |
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| 1 <tool id="sort_rows" name="Sort a row" version="0.0.1"> | |
| 2 <description>according to their columns</description> | |
| 3 <command>python -c 'for line in ["\t".join(sorted(line.strip().split("\t"))) for line in open("$input").readlines() ]: print line' > $outfile</command> | |
| 4 <inputs> | |
| 5 <param format="tabular" name="input" type="data" label="Tabular file that should be sorted"/> | |
| 6 </inputs> | |
| 7 <outputs> | |
| 8 <data format="tabular" name="outfile" metadata_source="input"/> | |
| 9 </outputs> | |
| 10 <options sanitize="False"/> | |
| 11 <tests> | |
| 12 | |
| 13 </tests> | |
| 14 <help> | |
| 15 | |
| 16 .. class:: infomark | |
| 17 | |
| 18 **TIP:** If your data is not TAB delimited, use *Text Manipulation->Convert* | |
| 19 | |
| 20 **What it does** | |
| 21 | |
| 22 That tool sorts each row in a TAB separated file, according to their columns. In other words: It is a sorted reordering of all columns. | |
| 23 | |
| 24 | |
| 25 </help> | |
| 26 </tool> |