Mercurial > repos > bgruening > sklearn_regression_metrics

comparison regression_metrics.xml @ 17:25b74e5f42f4 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
author bgruening
date Tue, 14 May 2019 17:53:59 -0400
parents d2d36ee2c061
children 3cc8a461bc5d
comparison
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16:939e3666cad5 17:25b74e5f42f4
19 import json 19 import json
20 import pandas 20 import pandas
21 import numpy as np 21 import numpy as np
22 from sklearn import metrics 22 from sklearn import metrics
23 23
24 exec(open("$__tool_directory__/utils.py").read(), globals()) 24 sys.path.insert(0, '$__tool_directory__')
25 from utils import read_columns
25 26
26 input_json_path = sys.argv[1] 27 input_json_path = sys.argv[1]
27 with open(input_json_path, "r") as param_handler: 28 with open(input_json_path, "r") as param_handler:
28 params = json.load(param_handler) 29 params = json.load(param_handler)
29 30
37 "$regression_metrics.infile1", 38 "$regression_metrics.infile1",
38 c = c, 39 c = c,
39 c_option = column_option, 40 c_option = column_option,
40 sep='\t', 41 sep='\t',
41 header=header, 42 header=header,
42 parse_dates=True 43 parse_dates=True)
43 )
44 44
45 header='infer' if params["regression_metrics"]["header2"] else None 45 header='infer' if params["regression_metrics"]["header2"] else None
46 column_option = params["regression_metrics"]["column_selector_options_2"]["selected_column_selector_option2"] 46 column_option = params["regression_metrics"]["column_selector_options_2"]["selected_column_selector_option2"]
47 if column_option in ["by_index_number", "all_but_by_index_number", "by_header_name", "all_but_by_header_name"]: 47 if column_option in ["by_index_number", "all_but_by_index_number", "by_header_name", "all_but_by_header_name"]:
48 c = params["regression_metrics"]["column_selector_options_2"]["col2"] 48 c = params["regression_metrics"]["column_selector_options_2"]["col2"]
52 "$regression_metrics.infile2", 52 "$regression_metrics.infile2",
53 c = c, 53 c = c,
54 c_option = column_option, 54 c_option = column_option,
55 sep='\t', 55 sep='\t',
56 header=header, 56 header=header,
57 parse_dates=True 57 parse_dates=True)
58 )
59 58
60 options = params["regression_metrics"].get("options", {}) 59 options = params["regression_metrics"].get("options", {})
61 if options and options.get('average', '') == 'None': 60 if options and options.get('average', '') == 'None':
62 options['average'] = None 61 options['average'] = None
63 metric = params["regression_metrics"]["selected_metric"] 62 metric = params["regression_metrics"]["selected_metric"]