Mercurial > repos > bgruening > sklearn_numeric_clustering

comparison numeric_clustering.xml @ 6:4edccd1eaaf0 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
author bgruening
date Fri, 16 Feb 2018 09:13:42 -0500
parents 4fcf8b052fed
children 8a7b460ab534
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5:7dc70333811d 6:4edccd1eaaf0
114 <when value="AffinityPropagation"> 114 <when value="AffinityPropagation">
115 <section name="options" title="Advanced Options" expanded="False"> 115 <section name="options" title="Advanced Options" expanded="False">
116 <param argument="damping" type="float" optional="true" value="0.5" label="Damping factor" help="Damping factor between 0.5 and 1."/> 116 <param argument="damping" type="float" optional="true" value="0.5" label="Damping factor" help="Damping factor between 0.5 and 1."/>
117 <expand macro="max_iter" default_value="200"/> 117 <expand macro="max_iter" default_value="200"/>
118 <param argument="convergence_iter" type="integer" optional="true" value="15" label="Number of iterations at each convergence step" help="Number of iterations with no change in the number of estimated clusters that stops the convergence."/> 118 <param argument="convergence_iter" type="integer" optional="true" value="15" label="Number of iterations at each convergence step" help="Number of iterations with no change in the number of estimated clusters that stops the convergence."/>
119 <param argument="copy" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolflase" checked="true" label="Copy" help="If False, the affinity matrix is modified inplace by the algorithm, for memory efficiency."/> 119 <param argument="copy" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolflase" checked="true" label="Copy" help="If False, the affinity matrix is modified inplace by the algorithm, for memory efficiency."/>
120 <!--param argument="preference"/--> 120 <!--param argument="preference"/-->
121 <param argument="affinity" type="select" label="Affinity" help="Affinity to use; euclidean uses the negative squared euclidean distance between points."> 121 <param argument="affinity" type="select" label="Affinity" help="Affinity to use; euclidean uses the negative squared euclidean distance between points.">
122 <option value="euclidean">Euclidean</option> 122 <option value="euclidean">Euclidean</option>
123 <option value="precomputed">precomputed</option> 123 <option value="precomputed">precomputed</option>
124 </param> 124 </param>
283 <param name="eigen_solver" value="arpack"/> 283 <param name="eigen_solver" value="arpack"/>
284 <param name="n_neighbors" value="12"/> 284 <param name="n_neighbors" value="12"/>
285 <param name="n_clusters" value="4"/> 285 <param name="n_clusters" value="4"/>
286 <param name="assign_labels" value="discretize"/> 286 <param name="assign_labels" value="discretize"/>
287 <param name="random_state" value="100"/> 287 <param name="random_state" value="100"/>
288 <output name="outfile" file="empty_file.txt" compare="contains"/> 288 <output name="outfile" file="cluster_result12" compare="sim_size" />
289 </test> 289 </test>
290 <test> 290 <test>
291 <param name="infile" value="numeric_values.tabular" ftype="tabular"/> 291 <param name="infile" value="numeric_values.tabular" ftype="tabular"/>
292 <param name="selected_algorithm" value="SpectralClustering"/> 292 <param name="selected_algorithm" value="SpectralClustering"/>
293 <param name="selected_input_type" value="tabular"/> 293 <param name="selected_input_type" value="tabular"/>
294 <param name="start_column" value="2" /> 294 <param name="start_column" value="2" />
295 <param name="end_column" value="4" /> 295 <param name="end_column" value="4" />
296 <param name="assign_labels" value="discretize"/> 296 <param name="assign_labels" value="discretize"/>
297 <param name="random_state" value="100"/> 297 <param name="random_state" value="100"/>
298 <param name="degree" value="2"/> 298 <param name="degree" value="2"/>
299 <output name="outfile" file="empty_file.txt" compare="contains"/> 299 <output name="outfile" file="cluster_result13.txt" compare="sim_size" />
300 </test> 300 </test>
301 <test> 301 <test>
302 <param name="infile" value="numeric_values.tabular" ftype="tabular"/> 302 <param name="infile" value="numeric_values.tabular" ftype="tabular"/>
303 <param name="selected_algorithm" value="MiniBatchKMeans"/> 303 <param name="selected_algorithm" value="MiniBatchKMeans"/>
304 <param name="selected_input_type" value="tabular"/> 304 <param name="selected_input_type" value="tabular"/>