Mercurial > repos > bgruening > sklearn_feature_selection

comparison feature_selection.xml @ 5:de0950f27aba draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 64158f357e708f0b60d2669d92d614f7aee34c0e
author bgruening
date Wed, 06 Jun 2018 17:38:50 -0400
parents 73c12f296b1c
children dc574d9778bd
comparison
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4:73c12f296b1c 5:de0950f27aba
34 features_has_header = params["input_options"]["header1"] 34 features_has_header = params["input_options"]["header1"]
35 input_type = params["input_options"]["selected_input"] 35 input_type = params["input_options"]["selected_input"]
36 if input_type=="tabular": 36 if input_type=="tabular":
37 header = 'infer' if features_has_header else None 37 header = 'infer' if features_has_header else None
38 column_option = params["input_options"]["column_selector_options_1"]["selected_column_selector_option"] 38 column_option = params["input_options"]["column_selector_options_1"]["selected_column_selector_option"]
39 if column_option == "by_index_number": 39 if column_option in ["by_index_number", "all_but_by_index_number"]:
40 c = params["input_options"]["column_selector_options_1"]["col1"] 40 c = params["input_options"]["column_selector_options_1"]["col1"]
41 else: 41 else:
42 c = None 42 c = None
43 X, input_df = read_columns( 43 X, input_df = read_columns(
44 "$input_options.infile1", 44 "$input_options.infile1",
53 X = mmread(open("$input_options.infile1", 'r')) 53 X = mmread(open("$input_options.infile1", 'r'))
54 54
55 ## Read labels 55 ## Read labels
56 header = 'infer' if params["input_options"]["header2"] else None 56 header = 'infer' if params["input_options"]["header2"] else None
57 column_option = params["input_options"]["column_selector_options_2"]["selected_column_selector_option2"] 57 column_option = params["input_options"]["column_selector_options_2"]["selected_column_selector_option2"]
58 if column_option == "by_index_number": 58 if column_option in ["by_index_number", "all_but_by_index_number"]:
59 c = params["input_options"]["column_selector_options_2"]["col2"] 59 c = params["input_options"]["column_selector_options_2"]["col2"]
60 else: 60 else:
61 c = None 61 c = None
62 y = read_columns( 62 y = read_columns(
63 "$input_options.infile2", 63 "$input_options.infile2",