Mercurial > repos > bgruening > sklearn_feature_selection

comparison feature_selection.xml @ 4:73c12f296b1c draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
author bgruening
date Tue, 05 Jun 2018 06:41:10 -0400
parents 0dc80ab8ec21
children de0950f27aba
comparison
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3:0dc80ab8ec21 4:73c12f296b1c
33 ## Read features 33 ## Read features
34 features_has_header = params["input_options"]["header1"] 34 features_has_header = params["input_options"]["header1"]
35 input_type = params["input_options"]["selected_input"] 35 input_type = params["input_options"]["selected_input"]
36 if input_type=="tabular": 36 if input_type=="tabular":
37 header = 'infer' if features_has_header else None 37 header = 'infer' if features_has_header else None
38 header = 'infer' if params["input_options"]["header1"] else None 38 column_option = params["input_options"]["column_selector_options_1"]["selected_column_selector_option"]
39 if column_option == "by_index_number":
40 c = params["input_options"]["column_selector_options_1"]["col1"]
41 else:
42 c = None
39 X, input_df = read_columns( 43 X, input_df = read_columns(
40 "$input_options.infile1", 44 "$input_options.infile1",
41 "$input_options.col1", 45 c = c,
46 c_option = column_option,
42 return_df = True, 47 return_df = True,
43 sep='\t', 48 sep='\t',
44 header=header, 49 header=header,
45 parse_dates=True 50 parse_dates=True
46 ) 51 )
47 else: 52 else:
48 X = mmread(open("$input_options.infile1", 'r')) 53 X = mmread(open("$input_options.infile1", 'r'))
49 54
50 ## Read labels 55 ## Read labels
51 header = 'infer' if params["input_options"]["header2"] else None 56 header = 'infer' if params["input_options"]["header2"] else None
57 column_option = params["input_options"]["column_selector_options_2"]["selected_column_selector_option2"]
58 if column_option == "by_index_number":
59 c = params["input_options"]["column_selector_options_2"]["col2"]
60 else:
61 c = None
52 y = read_columns( 62 y = read_columns(
53 "$input_options.infile2", 63 "$input_options.infile2",
54 "$input_options.col2", 64 c = c,
65 c_option = column_option,
55 sep='\t', 66 sep='\t',
56 header=header, 67 header=header,
57 parse_dates=True 68 parse_dates=True
58 ) 69 )
59 y=y.ravel() 70 y=y.ravel()