Mercurial > repos > bgruening > sklearn_build_pipeline

changeset 6:c2bd4fdba005 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
author bgruening
date Thu, 11 Oct 2018 03:19:13 -0400
parents 092b42170dd1
children 1187a20b7e2d
files pipeline.xml test-data/abc_model01 test-data/abc_result01 test-data/abr_model01 test-data/abr_result01 test-data/glm_model08 test-data/glm_result08
diffstat 7 files changed, 23 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/pipeline.xml	Sat Sep 29 07:16:09 2018 -0400
+++ b/pipeline.xml	Thu Oct 11 03:19:13 2018 -0400
@@ -286,6 +286,14 @@
             <param name="selected_estimator" value="RandomForestRegressor"/>
             <output name="outfile" file="pipeline10" compare="sim_size" delta="1"/>
         </test>
+        <test expect_failure="true">
+            <conditional name="component_selector">
+                <param name="component_type" value="None"/>
+            </conditional>
+            <param name="selected_module" value="ensemble"/>
+            <param name="selected_estimator" value="RandomForestRegressor"/>
+            <param name="text_params" value="n_estimators=__import__('os').system('ls ~')"/>
+        </test>
     </tests>
     <help>
         <![CDATA[
Binary file test-data/abc_model01 has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/abc_result01	Thu Oct 11 03:19:13 2018 -0400
@@ -0,0 +1,6 @@
+0	1	2	3	predicted
+3.68258022948	2.82110345641	-3.9901407239999998	-1.9523364774	1
+0.015942057224	-0.7119585943469999	0.125502976978	-0.972218263337	0
+2.0869076882499997	0.929399321468	-2.1292408448400004	-1.9971402218799998	1
+1.4132105208399999	0.523750660422	-1.4210539291	-1.49298569451	1
+0.7683140439399999	1.38267855169	-0.989045048734	0.649504257894	1
Binary file test-data/abr_model01 has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/abr_result01	Thu Oct 11 03:19:13 2018 -0400
@@ -0,0 +1,6 @@
+0	1	2	3	4	predicted
+86.97021227350001	1.00532111569	-1.01739601979	-0.613139481654	0.641846874331	0.323842059244
+91.2021798817	-0.6215229712070001	1.11914889596	0.390012184498	1.28956938152	1.1503117056799999
+-47.4101632272	-0.638416457964	-0.7327774684530001	-0.8640261049779999	-1.06109770116	-0.7191695359690001
+61.712804630200004	-1.0999480057700002	-0.739679672932	0.585657963012	1.4890682753600002	1.1503117056799999
+-206.998295124	0.130238853011	0.70574123041	1.3320656526399999	-1.3322092373799999	-0.7191695359690001
Binary file test-data/glm_model08 has changed
--- a/test-data/glm_result08	Sat Sep 29 07:16:09 2018 -0400
+++ b/test-data/glm_result08	Thu Oct 11 03:19:13 2018 -0400
@@ -1,5 +1,5 @@
-3.68258022948	2.82110345641	-3.9901407239999998	-1.9523364774	1
+3.68258022948	2.82110345641	-3.9901407239999998	-1.9523364774	0
 0.015942057224	-0.7119585943469999	0.125502976978	-0.972218263337	0
-2.0869076882499997	0.929399321468	-2.1292408448400004	-1.9971402218799998	1
-1.4132105208399999	0.523750660422	-1.4210539291	-1.49298569451	1
+2.0869076882499997	0.929399321468	-2.1292408448400004	-1.9971402218799998	0
+1.4132105208399999	0.523750660422	-1.4210539291	-1.49298569451	0
 0.7683140439399999	1.38267855169	-0.989045048734	0.649504257894	1