Mercurial > repos > bgruening > sed_wrapper
diff sed.xml @ 0:8ae62a63e93d draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sed commit cfb00484086246d51865572f004e3140b8bf4852
| author | bgruening |
|---|---|
| date | Wed, 09 Nov 2016 14:50:45 -0500 |
| parents | |
| children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/sed.xml Wed Nov 09 14:50:45 2016 -0500 @@ -0,0 +1,56 @@ +<tool id="sed_stream_editor" name="Manipulation" version="0.0.1"> + <description>utility that parses and transforms text using regular expressions (sed)</description> + <command> +<![CDATA[ + sed -r '$pattern' + $input > $outfile +]]> + </command> + <inputs> + <param format="txt, tabular" name="input" type="data" label="Replace lines from"/> + <param name="pattern" type="text" value="" label="the pattern" help="here you can enter your sed expression (No syntax check or sanitising!)" /> + </inputs> + <outputs> + <data format="input" name="outfile" metadata_source="input"/> + </outputs> + <options sanitize="False"/> + <requirements> + <requirement type="binary">sed</requirement> + </requirements> + <tests> + + </tests> + <help> +<![CDATA[ + +.. class:: warningmark + +Use with caution! Its a plain wrapper around **sed** and the input is not sanitized. + + +----- + +**What it does** + +Changes every line of a text file according to a given regular expression. + +----- + +**Syntax** + +Use the **sed**-syntax -> **s/find-pattern/replace-pattern/** + +**Example** + +- **s/x/-/** Replace all **x** with **-**. + +- **s/_.*//** Splits a string after **_** and replaces the rest with nothing. +- **s/[^_]*_*//** Splits a string after **_** and replaces the first part with nothing. + +- **s/\\s.*//** Splits a string after whitespaces and replaces the rest with nothing. +- **s/\\S*\\s*//** Splits a string after whitespaces and replaces the first part with nothing. + + +]]> + </help> +</tool>
