diff sed.xml @ 0:8ae62a63e93d draft default tip

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sed commit cfb00484086246d51865572f004e3140b8bf4852
author bgruening
date Wed, 09 Nov 2016 14:50:45 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/sed.xml	Wed Nov 09 14:50:45 2016 -0500
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+<tool id="sed_stream_editor" name="Manipulation" version="0.0.1">
+    <description>utility that parses and transforms text using regular expressions (sed)</description>
+    <command>
+<![CDATA[
+    sed -r '$pattern'
+        $input > $outfile
+]]>
+    </command>
+    <inputs>
+        <param format="txt, tabular" name="input" type="data" label="Replace lines from"/>
+        <param name="pattern" type="text" value="" label="the pattern" help="here you can enter your sed expression (No syntax check or sanitising!)" />
+    </inputs>
+    <outputs>
+        <data format="input" name="outfile" metadata_source="input"/>
+    </outputs>
+    <options sanitize="False"/>
+    <requirements>
+        <requirement type="binary">sed</requirement>
+    </requirements>
+    <tests>
+
+    </tests>
+    <help>
+<![CDATA[
+
+.. class:: warningmark
+
+Use with caution! Its a plain wrapper around **sed** and the input is not sanitized.
+
+
+-----
+
+**What it does**
+
+Changes every line of a text file according to a given regular expression.
+
+-----
+
+**Syntax**
+
+Use the **sed**-syntax -> **s/find-pattern/replace-pattern/**
+
+**Example**
+
+- **s/x/-/** Replace all **x** with **-**.
+
+- **s/_.*//** Splits a string after **_** and replaces the rest with nothing.
+- **s/[^_]*_*//** Splits a string after **_** and replaces the first part with nothing.
+
+- **s/\\s.*//** Splits a string after whitespaces and replaces the rest with nothing.
+- **s/\\S*\\s*//** Splits a string after whitespaces and replaces the first part with nothing.
+
+
+]]>
+    </help>
+</tool>