Mercurial > repos > bgruening > sambamba_merge

annotate test-data/2.markdup.txt @ 0:305a4f796bd3 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/biod/sambamba commit 99bb4ed496a9cce79ab0a7e613230cf63a44d9f9
author bgruening
date Mon, 10 Feb 2025 19:11:44 +0000
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
305a4f796bd3 planemo upload for repository https://github.com/biod/sambamba commit 99bb4ed496a9cce79ab0a7e613230cf63a44d9f9
bgruening
parents:
diff changeset
1
305a4f796bd3 planemo upload for repository https://github.com/biod/sambamba commit 99bb4ed496a9cce79ab0a7e613230cf63a44d9f9
bgruening
parents:
diff changeset
2 sambamba 1.0.1
305a4f796bd3 planemo upload for repository https://github.com/biod/sambamba commit 99bb4ed496a9cce79ab0a7e613230cf63a44d9f9
bgruening
parents:
diff changeset
3 by Artem Tarasov and Pjotr Prins (C) 2012-2023
305a4f796bd3 planemo upload for repository https://github.com/biod/sambamba commit 99bb4ed496a9cce79ab0a7e613230cf63a44d9f9
bgruening
parents:
diff changeset
4 LDC 1.39.0 / DMD v2.109.1 / LLVM17.0.6 / bootstrap LDC - the LLVM D compiler (1.39.0)
305a4f796bd3 planemo upload for repository https://github.com/biod/sambamba commit 99bb4ed496a9cce79ab0a7e613230cf63a44d9f9
bgruening
parents:
diff changeset
5
305a4f796bd3 planemo upload for repository https://github.com/biod/sambamba commit 99bb4ed496a9cce79ab0a7e613230cf63a44d9f9
bgruening
parents:
diff changeset
6 finding positions of the duplicate reads in the file...
305a4f796bd3 planemo upload for repository https://github.com/biod/sambamba commit 99bb4ed496a9cce79ab0a7e613230cf63a44d9f9
bgruening
parents:
diff changeset
7 sorted 0 end pairs
305a4f796bd3 planemo upload for repository https://github.com/biod/sambamba commit 99bb4ed496a9cce79ab0a7e613230cf63a44d9f9
bgruening
parents:
diff changeset
8 and 4 single ends (among them 0 unmatched pairs)
305a4f796bd3 planemo upload for repository https://github.com/biod/sambamba commit 99bb4ed496a9cce79ab0a7e613230cf63a44d9f9
bgruening
parents:
diff changeset
9 collecting indices of duplicate reads... done in 0 ms
305a4f796bd3 planemo upload for repository https://github.com/biod/sambamba commit 99bb4ed496a9cce79ab0a7e613230cf63a44d9f9
bgruening
parents:
diff changeset
10 found 3 duplicates
305a4f796bd3 planemo upload for repository https://github.com/biod/sambamba commit 99bb4ed496a9cce79ab0a7e613230cf63a44d9f9
bgruening
parents:
diff changeset
11 collected list of positions in 0 min 0 sec
305a4f796bd3 planemo upload for repository https://github.com/biod/sambamba commit 99bb4ed496a9cce79ab0a7e613230cf63a44d9f9
bgruening
parents:
diff changeset
12 marking duplicates...
305a4f796bd3 planemo upload for repository https://github.com/biod/sambamba commit 99bb4ed496a9cce79ab0a7e613230cf63a44d9f9
bgruening
parents:
diff changeset
13 collected list of positions in 0 min 0 sec