Mercurial > repos > bgruening > repeat_masker

comparison test-data/small_dfam.fasta.cat @ 12:07acb3a096d7 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/repeatmasker commit 7a5f368a5859e659aa36d0358bb96ca12574e2cc
author iuc
date Mon, 24 Apr 2023 10:40:41 +0000
parents c348c911a415
children
comparison
equal deleted inserted replaced
11:fa311361317b 12:07acb3a096d7
80 v i ivi i 80 v i ivi i
81 C AmnL2-1#LINE/ 2556 ACGCTTTACAGAGTTAAATAAT 2535 81 C AmnL2-1#LINE/ 2556 ACGCTTTACAGAGTTAAATAAT 2535
82 82
83 Matrix = 25p39g.matrix 83 Matrix = 25p39g.matrix
84 Kimura (with divCpGMod) = 29.45 84 Kimura (with divCpGMod) = 29.45
85 CpG sites = 10, Kimura (unadjusted) = 31.65
85 Transitions / transversions = 1.43 (10/7) 86 Transitions / transversions = 1.43 (10/7)
86 Gap_init rate = 0.07 (5 / 70), avg. gap size = 1.00 (5 / 5) 87 Gap_init rate = 0.07 (5 / 70), avg. gap size = 1.00 (5 / 5)
87 88
88 67 2.94 1.43 0.00 scaffold_1 11981 12050 (2170) (CT)n#Simple_repeat 1 71 (0) c_b1s251i0 89 67 2.94 1.43 0.00 scaffold_1 11981 12050 (2170) (CT)n#Simple_repeat 1 71 (0) c_b1s251i0
89 90
111 112
112 ## Total Sequences: 1 113 ## Total Sequences: 1
113 ## Total Length: 14220 114 ## Total Length: 14220
114 ## Total NonMask ( excluding >20bp runs of N/X bases ): 14220 115 ## Total NonMask ( excluding >20bp runs of N/X bases ): 14220
115 ## Total NonSub ( excluding all non ACGT bases ):14220 116 ## Total NonSub ( excluding all non ACGT bases ):14220
116 RepeatMasker version 4.1.2-p1 , default mode 117 RepeatMasker version 4.1.5 , default mode
117 run with rmblastn version 2.10.0+ 118 run with rmblastn version 2.13.0+
118 RM Library: CONS-Dfam_3.3 119 RM Library: CONS-Dfam_3.7