Mercurial > repos > bgruening > recurring_lines
comparison recurring_lines.xml @ 0:f034a9d33aca draft default tip
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| author | bgruening |
|---|---|
| date | Thu, 15 May 2014 11:50:30 -0400 |
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| -1:000000000000 | 0:f034a9d33aca |
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| 1 <tool id="bg_text_file_with_recurring_lines" name="Create text file" version="0.1"> | |
| 2 <description>with recurring lines</description> | |
| 3 <command> | |
| 4 | |
| 5 #for $token in $token_set: | |
| 6 #if str($token.repeat_select.repeat_select_opts) == 'user': | |
| 7 times=#echo $token.repeat_select.times#; | |
| 8 #else: | |
| 9 times=`wc -l $token.repeat_select.infile | awk '{print $1}'`; | |
| 10 #end if | |
| 11 | |
| 12 yes -- "${token.line}" 2>/dev/null | head -n \$times >> $outfile; | |
| 13 #end for | |
| 14 | |
| 15 </command> | |
| 16 <inputs> | |
| 17 | |
| 18 <repeat name="token_set" title=" selection" min="1"> | |
| 19 | |
| 20 <param name="line" type="text" size="30" label="Characters to insert" help="Specify the characters that will be inserted X times in every line"/> | |
| 21 | |
| 22 <conditional name="repeat_select"> | |
| 23 <param name="repeat_select_opts" type="select" label="Specify the number of iterations by"> | |
| 24 <option value="file">File (for each line in file)</option> | |
| 25 <option value="user" selected="True">User defined number</option> | |
| 26 </param> | |
| 27 <when value="user"> | |
| 28 <param name="times" size="10" type="integer" value="10" min="1" label="How many times?"/> | |
| 29 </when> | |
| 30 <when value="file"> | |
| 31 <param name="infile" type="data" format="txt" label="Template file" | |
| 32 help="For every line, the specified characters will be written once. That means X is the line-number from the given file."/> | |
| 33 </when> | |
| 34 </conditional> | |
| 35 </repeat> | |
| 36 | |
| 37 </inputs> | |
| 38 <outputs> | |
| 39 <data format="txt" name="outfile" from_work_dir="prediction" label="Generated text file"/> | |
| 40 </outputs> | |
| 41 <tests> | |
| 42 <test> | |
| 43 </test> | |
| 44 </tests> | |
| 45 <help> | |
| 46 | |
| 47 .. class:: infomark | |
| 48 | |
| 49 **What it does** | |
| 50 | |
| 51 This tool creates a text file with recurring lines. You can specify a bunch of characters or entire sentences. | |
| 52 The entire string will be printed X times separated by a line break. X can be either given by the use as a number or calculated by a given file. | |
| 53 In case the user provides a file, the line number will be used as X. | |
| 54 | |
| 55 | |
| 56 **References** | |
| 57 | |
| 58 Bjoern A. Gruening: https://github.com/bgruening/galaxytools/ | |
| 59 | |
| 60 </help> | |
| 61 </tool> |