Mercurial > repos > bgruening > precommit_test

comparison tool_dependencies.xml @ 9:f126b49e93e7 draft

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Uploaded
author bgruening
date Thu, 06 Jun 2013 02:38:59 -0400
parents fbc64ecd5295
children 5b253fafd35a
comparison
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8:fbc64ecd5295 9:f126b49e93e7
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="blat" version="1.0.0"> 3 <package name="fastqc_dist_0_10_1_dependency" version="0.10.1">
4 <install version="1.0"> 4 <repository changeset_revision="7d57dba74532" name="upload_testing" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu" />
5 <actions> 5 </package>
6 <action type="download_by_url">http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/blat/blat</action>
7 <action type="move_file">
8 <source>blat</source>
9 <destination>$INSTALL_DIR/bin</destination>
10 </action>
11 <action type="shell_command">chmod +x $INSTALL_DIR/bin/blat</action>
12 <action type="set_environment">
13 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
14 </action>
15 </actions>
16 </install>
17 <readme>
18 The BLAT binary for linux x86_64 is retrieved from UCSC.
19 </readme>
20 </package>
21 </tool_dependency> 6 </tool_dependency>