Mercurial > repos > bgruening > precommit_test

comparison tool_dependencies.xml @ 13:564b46e4fda7 draft

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author bgruening
date Sun, 30 Jun 2013 19:30:17 -0400
parents 856591655486
children b738c51af132
comparison
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12:856591655486 13:564b46e4fda7
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <!--
4 <package name="lapack" version="3.4.2"> 3 <package name="lapack" version="3.4.2">
5 <repository name="package_lapack_3_4" owner="bgruening" prior_installation_required="True" /> 4 <repository changeset_revision="a6b8f46acca7" name="package_lapack_3_4" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
6 </package> 5 </package>
7 <package name="atlas" version="3.10.1"> 6 <package name="atlas" version="3.10.1">
8 <repository name="package_atlas_3_10" owner="bgruening" prior_installation_required="True" /> 7 <repository changeset_revision="25dc49b0d6d5" name="package_atlas_3_10" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
9 </package> 8 </package>
10
11 <package name="readline" version="6.2"> 9 <package name="readline" version="6.2">
12 <repository name="package_readline_6_2" owner="boris" toolshed="http://testtoolshed.g2.bx.psu.edu/" /> 10 <repository changeset_revision="782fae4417eb" name="package_readline_6_2" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
13 </package> 11 </package>
14 -->
15 12
16 <package name="R_3_0_1" version="3.0.1"> 13 <package name="R_3_0_1" version="3.0.1">
17 <install version="1.0"> 14 <install version="1.0">
18 <actions> 15 <actions>
19 <action type="download_by_url">http://cran.ms.unimelb.edu.au/src/base/R-3/R-3.0.1.tar.gz</action> 16 <action type="download_by_url">http://cran.ms.unimelb.edu.au/src/base/R-3/R-3.0.1.tar.gz</action>
20 <!--
21 <action type="set_environment_for_install"> 17 <action type="set_environment_for_install">
22 <repository name="package_atlas_3_10" owner="bgruening"> 18 <repository changeset_revision="25dc49b0d6d5" name="package_atlas_3_10" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu">
23 <package name="atlas" version="3.10.1" /> 19 <package name="atlas" version="3.10.1" />
24 </repository> 20 </repository>
25 <repository name="package_lapack_3_4" owner="bgruening"> 21 <repository changeset_revision="a6b8f46acca7" name="package_lapack_3_4" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu">
26 <package name="lapack" version="3.4.2" /> 22 <package name="lapack" version="3.4.2" />
27 </repository> 23 </repository>
24 <repository changeset_revision="782fae4417eb" name="package_readline_6_2" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu">
25 <package name="readline" version="6.2" />
26 </repository>
28 </action> 27 </action>
29 --> 28
30 <!-- 29 <!--
31 with-blas="$LAPACK_LIB_DIR" 30 with-blas="$LAPACK_LIB_DIR"
32 with-lapack="-L$ATLAS_LIB_DIR -llapack -lcblas" 31 with-lapack="-L$ATLAS_LIB_DIR -llapack -lcblas"
33 32
34 export BLAS=$LAPACK_LIB_DIR/libblas.a &amp;&amp; 33 export BLAS=$LAPACK_LIB_DIR/libblas.a &amp;&amp;
35 export LAPACK=$LAPACK_LIB_DIR/liblapack.a &amp;&amp; 34 export LAPACK=$LAPACK_LIB_DIR/liblapack.a &amp;&amp;
36 export ATLAS=$ATLAS_LIB_DIR/libatlas.a &amp;&amp; 35 export ATLAS=$ATLAS_LIB_DIR/libatlas.a &amp;&amp;
37 36 LD_LIBRARY_PATH
38 37 -->
39 <action type="set_environment_for_install"> 38 <action type="shell_command">
40 <repository changeset_revision="1301ec7705a8" name="package_readline_6_2" owner="boris" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/"> 39 export LD_LIBRARY_PATH=$READLINE_LIB_PATH &amp;&amp;
41 <package name="readline" version="6.2" /> 40 ./configure --with-lapack="-L$ATLAS_LIB_DIR -llapack -lcblas" --with-blas="$LAPACK_LIB_DIR" --enable-R-shlib --with-x=no --with-readline=yes --prefix=$INSTALL_DIR &amp;&amp; make &amp;&amp; make install
42 </repository>
43 </action> 41 </action>
44 -->
45 <action type="shell_command">./configure --enable-R-shlib --with-x=no --with-readline=no --prefix=$INSTALL_DIR &amp;&amp; make &amp;&amp; make install</action>
46 <action type="set_environment"> 42 <action type="set_environment">
47 <environment_variable action="set_to" name="R_HOME">$INSTALL_DIR/lib/R</environment_variable> 43 <environment_variable action="set_to" name="R_HOME">$INSTALL_DIR/lib/R</environment_variable>
48 <environment_variable action="set_to" name="R_LIBS">$INSTALL_DIR/lib/R/library</environment_variable> 44 <environment_variable action="set_to" name="R_LIBS">$INSTALL_DIR/lib/R/library</environment_variable>
49 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/lib/R/bin</environment_variable> 45 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/lib/R/bin</environment_variable>
46 <environment_variable action="append_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib/R/lib</environment_variable>
50 </action> 47 </action>
51 </actions> 48 </actions>
52 </install> 49 </install>
53 <readme></readme> 50 <readme />
54 </package> 51 </package>
55 </tool_dependency> 52 </tool_dependency>