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7
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1 <?xml version="1.0"?>
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0
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2 <tool_dependency>
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14
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3 <package name="perl" version="5.18.1">
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4 <repository changeset_revision="091a97f8c585" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
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11
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5 </package>
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14
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6 <package name="bioperl" version="1.6.922">
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11
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7 <install version="1.0">
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8 <actions>
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14
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9 <!-- install perl -->
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10 <!--<action type="download_by_url">http://search.cpan.org/CPAN/authors/id/C/CJ/CJFIELDS/BioPerl-1.6.922.tar.gz</action>-->
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11 <!-- populate the environment variables from the dependend repos -->
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11
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12 <action type="set_environment_for_install">
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14
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13 <repository changeset_revision="091a97f8c585" name="package_perl_5_18" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu">
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14 <package name="perl" version="5.18.1" />
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13
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15 </repository>
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11
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16 </action>
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13
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17
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14
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18 <action type="shell_command">cpanm --local-lib=$INSTALL_DIR XML::Parser</action>
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19 <action type="shell_command">cpanm --local-lib=$INSTALL_DIR Bundle::BioPerl</action>
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20
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11
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21
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22 <action type="set_environment">
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14
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23 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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24 <environment_variable action="prepend_to" name="PERL5LIB">$INSTALL_DIR/lib/perl5</environment_variable>
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25 <environment_variable action="set_to" name="PERL_ROOT_DIR">$INSTALL_DIR/lib</environment_variable>
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11
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26 </action>
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27 </actions>
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28 </install>
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14
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29 <readme>
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30 Bundle::BioPerl
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31 </readme>
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9
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32 </package>
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7
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33 </tool_dependency>
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