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3 <head><title>1000gsample.fastq FastQC Report</title>
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193 </style>
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194
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195 </head>
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196 <body>
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197 <div class="header">
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198 <div id="header_title"><img src="fastqc_icon.png" alt="FastQC">FastQC Report</div>
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199 <div id="header_filename">
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200 Wed 5 Jun 2013<br />
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201 1000gsample.fastq
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202 </div>
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203 </div>
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204 <div class="summary">
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205 <h2>Summary</h2>
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206 <ul>
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207 <li><img src="tick.png" alt="[PASS]"> <a href="#M0">Basic Statistics</a></li>
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208 <li><img src="warning.png" alt="[WARNING]"> <a href="#M1">Per base sequence quality</a></li>
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209 <li><img src="warning.png" alt="[WARNING]"> <a href="#M2">Per sequence quality scores</a></li>
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210 <li><img src="warning.png" alt="[WARNING]"> <a href="#M3">Per base sequence content</a></li>
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211 <li><img src="tick.png" alt="[PASS]"> <a href="#M4">Per base GC content</a></li>
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212 <li><img src="warning.png" alt="[WARNING]"> <a href="#M5">Per sequence GC content</a></li>
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213 <li><img src="tick.png" alt="[PASS]"> <a href="#M6">Per base N content</a></li>
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214 <li><img src="tick.png" alt="[PASS]"> <a href="#M7">Sequence Length Distribution</a></li>
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215 <li><img src="tick.png" alt="[PASS]"> <a href="#M8">Sequence Duplication Levels</a></li>
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216 <li><img src="warning.png" alt="[WARNING]"> <a href="#M9">Overrepresented sequences</a></li>
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217 <li><img src="error.png" alt="[FAIL]"> <a href="#M10">Kmer Content</a></li>
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218 </ul>
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219 </div>
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220 <div class="main">
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221 <div class="module"><h2 id="M0"><img src="tick.png" alt="[OK]"> Basic Statistics</h2>
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222 <table>
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223 <tr>
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224 <th>Measure</th>
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225 <th>Value</th>
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226 </tr>
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227 <tr>
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228 <td>Filename</td>
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229 <td>1000gsample.fastq</td>
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230 </tr>
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231 <tr>
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232 <td>File type</td>
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233 <td>Conventional base calls</td>
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234 </tr>
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235 <tr>
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236 <td>Encoding</td>
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237 <td>Sanger / Illumina 1.9</td>
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238 </tr>
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239 <tr>
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240 <td>Total Sequences</td>
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241 <td>5000</td>
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242 </tr>
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243 <tr>
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244 <td>Filtered Sequences</td>
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245 <td>0</td>
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246 </tr>
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247 <tr>
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248 <td>Sequence length</td>
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249 <td>54</td>
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250 </tr>
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251 <tr>
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252 <td>%GC</td>
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253 <td>43</td>
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254 </tr>
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255 </table>
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256 </div>
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257 <div class="module"><h2 id="M1"><img src="warning.png" alt="[WARN]"> Per base sequence quality</h2>
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258 <p><img class="indented" src="per_base_quality.png" alt="Per base quality graph"></p>
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259 </div>
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260 <div class="module"><h2 id="M2"><img src="warning.png" alt="[WARN]"> Per sequence quality scores</h2>
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261 <p><img class="indented" src="per_sequence_quality.png" alt="Per Sequence quality graph"></p>
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262 </div>
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263 <div class="module"><h2 id="M3"><img src="warning.png" alt="[WARN]"> Per base sequence content</h2>
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264 <p><img class="indented" src="per_base_sequence_content.png" alt="Per base sequence content"></p>
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265 </div>
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266 <div class="module"><h2 id="M4"><img src="tick.png" alt="[OK]"> Per base GC content</h2>
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267 <p><img class="indented" src="per_base_gc_content.png" alt="Per base GC content graph"></p>
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268 </div>
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269 <div class="module"><h2 id="M5"><img src="warning.png" alt="[WARN]"> Per sequence GC content</h2>
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270 <p><img class="indented" src="per_sequence_gc_content.png" alt="Per sequence GC content graph"></p>
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271 </div>
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272 <div class="module"><h2 id="M6"><img src="tick.png" alt="[OK]"> Per base N content</h2>
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273 <p><img class="indented" src="per_base_n_content.png" alt="N content graph"></p>
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274 </div>
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275 <div class="module"><h2 id="M7"><img src="tick.png" alt="[OK]"> Sequence Length Distribution</h2>
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276 <p><img class="indented" src="sequence_length_distribution.png" alt="Sequence length distribution"></p>
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277 </div>
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278 <div class="module"><h2 id="M8"><img src="tick.png" alt="[OK]"> Sequence Duplication Levels</h2>
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279 <p><img class="indented" src="duplication_levels.png" alt="Duplication level graph"></p>
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280 </div>
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281 <div class="module"><h2 id="M9"><img src="warning.png" alt="[WARN]"> Overrepresented sequences</h2>
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282 <table>
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283 <tr>
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284 <th>Sequence</th>
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285 <th>Count</th>
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286 <th>Percentage</th>
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287 <th>Possible Source</th>
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288 </tr>
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289 <tr>
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290 <td>CGGAAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT</td>
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291 <td>7</td>
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292 <td>0.13999999999999999</td>
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293 <td>Illumina Paired End PCR Primer 2 (96% over 33bp)</td>
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294 </tr>
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295 <tr>
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296 <td>CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC</td>
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297 <td>7</td>
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298 <td>0.13999999999999999</td>
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299 <td>Illumina Paired End PCR Primer 2 (100% over 35bp)</td>
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300 </tr>
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301 </table>
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302 </div>
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303 <div class="module"><h2 id="M10"><img src="error.png" alt="[FAIL]"> Kmer Content</h2>
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304 <p><img class="indented" src="kmer_profiles.png" alt="Kmer graph"></p>
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305 <table>
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306 <tr>
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307 <th>Sequence</th>
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308 <th>Count</th>
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309 <th>Obs/Exp Overall</th>
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310 <th>Obs/Exp Max</th>
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311 <th>Max Obs/Exp Position</th>
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312 </tr>
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313 <tr>
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314 <td>CCCCC</td>
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315 <td>1180</td>
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316 <td>9.957459</td>
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317 <td>29.638031</td>
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318 <td>50</td>
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319 </tr>
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320 <tr>
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321 <td>AAAAA</td>
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322 <td>2175</td>
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323 <td>4.133217</td>
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324 <td>7.129659</td>
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325 <td>47</td>
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326 </tr>
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327 <tr>
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328 <td>CTCCC</td>
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329 <td>555</td>
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330 <td>3.668942</td>
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331 <td>11.56272</td>
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332 <td>11</td>
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333 </tr>
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334 <tr>
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335 <td>CCTCC</td>
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336 <td>525</td>
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337 <td>3.4706206</td>
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338 <td>11.56272</td>
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339 <td>14</td>
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340 </tr>
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341 <tr>
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342 <td>CTGGG</td>
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343 <td>465</td>
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344 <td>3.0945942</td>
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345 <td>8.331139</td>
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346 <td>39</td>
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347 </tr>
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348 <tr>
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349 <td>GGGGG</td>
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350 <td>350</td>
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351 <td>2.9865708</td>
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352 <td>12.818572</td>
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353 <td>41</td>
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354 </tr>
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355 <tr>
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356 <td>TGGAA</td>
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357 <td>800</td>
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358 <td>2.9261596</td>
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359 <td>6.397646</td>
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360 <td>17</td>
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361 </tr>
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362 <tr>
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363 <td>CCCAG</td>
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364 <td>455</td>
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365 <td>2.855999</td>
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366 <td>9.429343</td>
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367 <td>40</td>
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368 </tr>
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369 <tr>
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370 <td>GAATG</td>
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371 <td>775</td>
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372 <td>2.8347175</td>
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373 <td>10.053445</td>
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374 <td>20</td>
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375 </tr>
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376 <tr>
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377 <td>GTGTG</td>
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378 <td>530</td>
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379 <td>2.763172</td>
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380 <td>7.8240557</td>
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381 <td>33</td>
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382 </tr>
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383 <tr>
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384 <td>GGGAG</td>
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385 <td>435</td>
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386 <td>2.7487729</td>
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387 <td>6.3220544</td>
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388 <td>43</td>
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389 </tr>
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390 <tr>
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391 <td>TGTGT</td>
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392 <td>670</td>
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393 <td>2.7303638</td>
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394 <td>6.109576</td>
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395 <td>27</td>
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396 </tr>
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397 <tr>
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398 <td>ATGGA</td>
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399 <td>735</td>
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400 <td>2.688409</td>
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401 <td>6.397646</td>
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402 <td>20</td>
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403 </tr>
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404 <tr>
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405 <td>GGAAT</td>
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406 <td>730</td>
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407 <td>2.6701207</td>
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408 <td>7.3115954</td>
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409 <td>19</td>
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410 </tr>
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411 <tr>
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412 <td>GCTGG</td>
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413 <td>400</td>
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414 <td>2.6620166</td>
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415 <td>8.322799</td>
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416 <td>31</td>
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417 </tr>
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418 <tr>
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419 <td>GGAGG</td>
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420 <td>420</td>
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421 <td>2.6539874</td>
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422 <td>7.9104857</td>
|
|
|
423 <td>40</td>
|
|
|
424 </tr>
|
|
|
425 <tr>
|
|
|
426 <td>GCAGG</td>
|
|
|
427 <td>405</td>
|
|
|
428 <td>2.5535064</td>
|
|
|
429 <td>14.17877</td>
|
|
|
430 <td>16</td>
|
|
|
431 </tr>
|
|
|
432 <tr>
|
|
|
433 <td>CCTGG</td>
|
|
|
434 <td>375</td>
|
|
|
435 <td>2.4900866</td>
|
|
|
436 <td>6.6367774</td>
|
|
|
437 <td>7</td>
|
|
|
438 </tr>
|
|
|
439 <tr>
|
|
|
440 <td>CAGCC</td>
|
|
|
441 <td>390</td>
|
|
|
442 <td>2.4479992</td>
|
|
|
443 <td>6.279937</td>
|
|
|
444 <td>38</td>
|
|
|
445 </tr>
|
|
|
446 <tr>
|
|
|
447 <td>GGCTG</td>
|
|
|
448 <td>365</td>
|
|
|
449 <td>2.4290898</td>
|
|
|
450 <td>9.97737</td>
|
|
|
451 <td>24</td>
|
|
|
452 </tr>
|
|
|
453 <tr>
|
|
|
454 <td>TGGGA</td>
|
|
|
455 <td>490</td>
|
|
|
456 <td>2.4202447</td>
|
|
|
457 <td>7.40506</td>
|
|
|
458 <td>20</td>
|
|
|
459 </tr>
|
|
|
460 <tr>
|
|
|
461 <td>CCAGC</td>
|
|
|
462 <td>385</td>
|
|
|
463 <td>2.4166145</td>
|
|
|
464 <td>6.286229</td>
|
|
|
465 <td>41</td>
|
|
|
466 </tr>
|
|
|
467 <tr>
|
|
|
468 <td>AATGG</td>
|
|
|
469 <td>660</td>
|
|
|
470 <td>2.4140818</td>
|
|
|
471 <td>5.4836965</td>
|
|
|
472 <td>18</td>
|
|
|
473 </tr>
|
|
|
474 <tr>
|
|
|
475 <td>GCCTG</td>
|
|
|
476 <td>360</td>
|
|
|
477 <td>2.3904827</td>
|
|
|
478 <td>8.295971</td>
|
|
|
479 <td>5</td>
|
|
|
480 </tr>
|
|
|
481 <tr>
|
|
|
482 <td>GCCTC</td>
|
|
|
483 <td>360</td>
|
|
|
484 <td>2.3851626</td>
|
|
|
485 <td>6.6286345</td>
|
|
|
486 <td>31</td>
|
|
|
487 </tr>
|
|
|
488 <tr>
|
|
|
489 <td>CCCTC</td>
|
|
|
490 <td>360</td>
|
|
|
491 <td>2.379854</td>
|
|
|
492 <td>8.267352</td>
|
|
|
493 <td>34</td>
|
|
|
494 </tr>
|
|
|
495 <tr>
|
|
|
496 <td>CTGTG</td>
|
|
|
497 <td>450</td>
|
|
|
498 <td>2.3408678</td>
|
|
|
499 <td>9.09864</td>
|
|
|
500 <td>44</td>
|
|
|
501 </tr>
|
|
|
502 <tr>
|
|
|
503 <td>GGAAG</td>
|
|
|
504 <td>500</td>
|
|
|
505 <td>2.3397229</td>
|
|
|
506 <td>14.031037</td>
|
|
|
507 <td>2</td>
|
|
|
508 </tr>
|
|
|
509 <tr>
|
|
|
510 <td>CAGCA</td>
|
|
|
511 <td>500</td>
|
|
|
512 <td>2.32932</td>
|
|
|
513 <td>10.47649</td>
|
|
|
514 <td>14</td>
|
|
|
515 </tr>
|
|
|
516 <tr>
|
|
|
517 <td>CAGGA</td>
|
|
|
518 <td>495</td>
|
|
|
519 <td>2.3111706</td>
|
|
|
520 <td>13.99981</td>
|
|
|
521 <td>17</td>
|
|
|
522 </tr>
|
|
|
523 <tr>
|
|
|
524 <td>TCCCA</td>
|
|
|
525 <td>470</td>
|
|
|
526 <td>2.305994</td>
|
|
|
527 <td>7.370469</td>
|
|
|
528 <td>39</td>
|
|
|
529 </tr>
|
|
|
530 <tr>
|
|
|
531 <td>CTGCC</td>
|
|
|
532 <td>345</td>
|
|
|
533 <td>2.285781</td>
|
|
|
534 <td>8.277508</td>
|
|
|
535 <td>10</td>
|
|
|
536 </tr>
|
|
|
537 <tr>
|
|
|
538 <td>GGTGG</td>
|
|
|
539 <td>340</td>
|
|
|
540 <td>2.2677608</td>
|
|
|
541 <td>5.009832</td>
|
|
|
542 <td>42</td>
|
|
|
543 </tr>
|
|
|
544 <tr>
|
|
|
545 <td>CCAGG</td>
|
|
|
546 <td>360</td>
|
|
|
547 <td>2.264732</td>
|
|
|
548 <td>6.300251</td>
|
|
|
549 <td>41</td>
|
|
|
550 </tr>
|
|
|
551 <tr>
|
|
|
552 <td>TTCCT</td>
|
|
|
553 <td>555</td>
|
|
|
554 <td>2.2516627</td>
|
|
|
555 <td>7.0961456</td>
|
|
|
556 <td>1</td>
|
|
|
557 </tr>
|
|
|
558 <tr>
|
|
|
559 <td>TCCCC</td>
|
|
|
560 <td>335</td>
|
|
|
561 <td>2.2145865</td>
|
|
|
562 <td>8.267353</td>
|
|
|
563 <td>29</td>
|
|
|
564 </tr>
|
|
|
565 <tr>
|
|
|
566 <td>CAGGC</td>
|
|
|
567 <td>350</td>
|
|
|
568 <td>2.2018228</td>
|
|
|
569 <td>6.300251</td>
|
|
|
570 <td>42</td>
|
|
|
571 </tr>
|
|
|
572 <tr>
|
|
|
573 <td>CTCCT</td>
|
|
|
574 <td>425</td>
|
|
|
575 <td>2.2009897</td>
|
|
|
576 <td>6.4701333</td>
|
|
|
577 <td>15</td>
|
|
|
578 </tr>
|
|
|
579 <tr>
|
|
|
580 <td>GGCAG</td>
|
|
|
581 <td>340</td>
|
|
|
582 <td>2.1436844</td>
|
|
|
583 <td>6.301676</td>
|
|
|
584 <td>16</td>
|
|
|
585 </tr>
|
|
|
586 <tr>
|
|
|
587 <td>CCCCA</td>
|
|
|
588 <td>340</td>
|
|
|
589 <td>2.129403</td>
|
|
|
590 <td>6.26596</td>
|
|
|
591 <td>31</td>
|
|
|
592 </tr>
|
|
|
593 <tr>
|
|
|
594 <td>CTCTG</td>
|
|
|
595 <td>410</td>
|
|
|
596 <td>2.1280441</td>
|
|
|
597 <td>5.1928453</td>
|
|
|
598 <td>48</td>
|
|
|
599 </tr>
|
|
|
600 <tr>
|
|
|
601 <td>TGGTG</td>
|
|
|
602 <td>405</td>
|
|
|
603 <td>2.1114805</td>
|
|
|
604 <td>6.520046</td>
|
|
|
605 <td>33</td>
|
|
|
606 </tr>
|
|
|
607 <tr>
|
|
|
608 <td>TTCCA</td>
|
|
|
609 <td>545</td>
|
|
|
610 <td>2.094778</td>
|
|
|
611 <td>6.7295837</td>
|
|
|
612 <td>33</td>
|
|
|
613 </tr>
|
|
|
614 <tr>
|
|
|
615 <td>CCCCT</td>
|
|
|
616 <td>315</td>
|
|
|
617 <td>2.0823722</td>
|
|
|
618 <td>6.607268</td>
|
|
|
619 <td>12</td>
|
|
|
620 </tr>
|
|
|
621 <tr>
|
|
|
622 <td>CTCAG</td>
|
|
|
623 <td>420</td>
|
|
|
624 <td>2.0652719</td>
|
|
|
625 <td>6.149596</td>
|
|
|
626 <td>46</td>
|
|
|
627 </tr>
|
|
|
628 <tr>
|
|
|
629 <td>AGGGA</td>
|
|
|
630 <td>440</td>
|
|
|
631 <td>2.0589561</td>
|
|
|
632 <td>7.0225415</td>
|
|
|
633 <td>31</td>
|
|
|
634 </tr>
|
|
|
635 <tr>
|
|
|
636 <td>CAGAG</td>
|
|
|
637 <td>440</td>
|
|
|
638 <td>2.054374</td>
|
|
|
639 <td>5.8390937</td>
|
|
|
640 <td>38</td>
|
|
|
641 </tr>
|
|
|
642 <tr>
|
|
|
643 <td>AGCAG</td>
|
|
|
644 <td>440</td>
|
|
|
645 <td>2.0543735</td>
|
|
|
646 <td>10.499857</td>
|
|
|
647 <td>15</td>
|
|
|
648 </tr>
|
|
|
649 <tr>
|
|
|
650 <td>CCCTG</td>
|
|
|
651 <td>310</td>
|
|
|
652 <td>2.05389</td>
|
|
|
653 <td>6.622006</td>
|
|
|
654 <td>24</td>
|
|
|
655 </tr>
|
|
|
656 <tr>
|
|
|
657 <td>CTTCC</td>
|
|
|
658 <td>390</td>
|
|
|
659 <td>2.0197318</td>
|
|
|
660 <td>6.4701333</td>
|
|
|
661 <td>17</td>
|
|
|
662 </tr>
|
|
|
663 <tr>
|
|
|
664 <td>AGGAA</td>
|
|
|
665 <td>580</td>
|
|
|
666 <td>2.0098667</td>
|
|
|
667 <td>10.390455</td>
|
|
|
668 <td>18</td>
|
|
|
669 </tr>
|
|
|
670 <tr>
|
|
|
671 <td>AGAGC</td>
|
|
|
672 <td>430</td>
|
|
|
673 <td>2.0076835</td>
|
|
|
674 <td>10.499858</td>
|
|
|
675 <td>5</td>
|
|
|
676 </tr>
|
|
|
677 <tr>
|
|
|
678 <td>TCTCC</td>
|
|
|
679 <td>385</td>
|
|
|
680 <td>1.9938378</td>
|
|
|
681 <td>5.181288</td>
|
|
|
682 <td>29</td>
|
|
|
683 </tr>
|
|
|
684 <tr>
|
|
|
685 <td>TCCTC</td>
|
|
|
686 <td>385</td>
|
|
|
687 <td>1.9938378</td>
|
|
|
688 <td>5.181288</td>
|
|
|
689 <td>48</td>
|
|
|
690 </tr>
|
|
|
691 <tr>
|
|
|
692 <td>TCAGC</td>
|
|
|
693 <td>405</td>
|
|
|
694 <td>1.9915122</td>
|
|
|
695 <td>12.286894</td>
|
|
|
696 <td>44</td>
|
|
|
697 </tr>
|
|
|
698 <tr>
|
|
|
699 <td>TGCTG</td>
|
|
|
700 <td>380</td>
|
|
|
701 <td>1.9767327</td>
|
|
|
702 <td>6.5055346</td>
|
|
|
703 <td>47</td>
|
|
|
704 </tr>
|
|
|
705 <tr>
|
|
|
706 <td>CACCC</td>
|
|
|
707 <td>315</td>
|
|
|
708 <td>1.9728295</td>
|
|
|
709 <td>6.259694</td>
|
|
|
710 <td>9</td>
|
|
|
711 </tr>
|
|
|
712 <tr>
|
|
|
713 <td>TCCTG</td>
|
|
|
714 <td>380</td>
|
|
|
715 <td>1.9723336</td>
|
|
|
716 <td>6.4845653</td>
|
|
|
717 <td>8</td>
|
|
|
718 </tr>
|
|
|
719 <tr>
|
|
|
720 <td>CAGGG</td>
|
|
|
721 <td>310</td>
|
|
|
722 <td>1.954536</td>
|
|
|
723 <td>6.3016763</td>
|
|
|
724 <td>21</td>
|
|
|
725 </tr>
|
|
|
726 <tr>
|
|
|
727 <td>GATGG</td>
|
|
|
728 <td>395</td>
|
|
|
729 <td>1.9510134</td>
|
|
|
730 <td>6.1708827</td>
|
|
|
731 <td>1</td>
|
|
|
732 </tr>
|
|
|
733 <tr>
|
|
|
734 <td>TGGCT</td>
|
|
|
735 <td>375</td>
|
|
|
736 <td>1.9507233</td>
|
|
|
737 <td>9.098641</td>
|
|
|
738 <td>45</td>
|
|
|
739 </tr>
|
|
|
740 <tr>
|
|
|
741 <td>AAGAG</td>
|
|
|
742 <td>560</td>
|
|
|
743 <td>1.9405607</td>
|
|
|
744 <td>9.524584</td>
|
|
|
745 <td>4</td>
|
|
|
746 </tr>
|
|
|
747 <tr>
|
|
|
748 <td>TGTGG</td>
|
|
|
749 <td>370</td>
|
|
|
750 <td>1.929007</td>
|
|
|
751 <td>6.5200467</td>
|
|
|
752 <td>30</td>
|
|
|
753 </tr>
|
|
|
754 <tr>
|
|
|
755 <td>CTGAG</td>
|
|
|
756 <td>390</td>
|
|
|
757 <td>1.9220302</td>
|
|
|
758 <td>6.163313</td>
|
|
|
759 <td>35</td>
|
|
|
760 </tr>
|
|
|
761 <tr>
|
|
|
762 <td>CCTGT</td>
|
|
|
763 <td>370</td>
|
|
|
764 <td>1.9204301</td>
|
|
|
765 <td>6.4845653</td>
|
|
|
766 <td>6</td>
|
|
|
767 </tr>
|
|
|
768 <tr>
|
|
|
769 <td>CAGAA</td>
|
|
|
770 <td>555</td>
|
|
|
771 <td>1.9189543</td>
|
|
|
772 <td>6.0476103</td>
|
|
|
773 <td>6</td>
|
|
|
774 </tr>
|
|
|
775 <tr>
|
|
|
776 <td>TCCCT</td>
|
|
|
777 <td>370</td>
|
|
|
778 <td>1.9161558</td>
|
|
|
779 <td>6.4766097</td>
|
|
|
780 <td>33</td>
|
|
|
781 </tr>
|
|
|
782 <tr>
|
|
|
783 <td>CCCAC</td>
|
|
|
784 <td>305</td>
|
|
|
785 <td>1.9101999</td>
|
|
|
786 <td>6.259694</td>
|
|
|
787 <td>4</td>
|
|
|
788 </tr>
|
|
|
789 <tr>
|
|
|
790 <td>CACCA</td>
|
|
|
791 <td>405</td>
|
|
|
792 <td>1.8825499</td>
|
|
|
793 <td>6.9757566</td>
|
|
|
794 <td>33</td>
|
|
|
795 </tr>
|
|
|
796 <tr>
|
|
|
797 <td>AAAGA</td>
|
|
|
798 <td>730</td>
|
|
|
799 <td>1.8732982</td>
|
|
|
800 <td>5.1399345</td>
|
|
|
801 <td>42</td>
|
|
|
802 </tr>
|
|
|
803 <tr>
|
|
|
804 <td>CAGTG</td>
|
|
|
805 <td>380</td>
|
|
|
806 <td>1.8727474</td>
|
|
|
807 <td>6.163313</td>
|
|
|
808 <td>30</td>
|
|
|
809 </tr>
|
|
|
810 <tr>
|
|
|
811 <td>GAAGA</td>
|
|
|
812 <td>540</td>
|
|
|
813 <td>1.8712552</td>
|
|
|
814 <td>7.792842</td>
|
|
|
815 <td>26</td>
|
|
|
816 </tr>
|
|
|
817 <tr>
|
|
|
818 <td>TCTCT</td>
|
|
|
819 <td>460</td>
|
|
|
820 <td>1.8662432</td>
|
|
|
821 <td>5.068676</td>
|
|
|
822 <td>8</td>
|
|
|
823 </tr>
|
|
|
824 <tr>
|
|
|
825 <td>TTTCC</td>
|
|
|
826 <td>460</td>
|
|
|
827 <td>1.8662429</td>
|
|
|
828 <td>5.073749</td>
|
|
|
829 <td>38</td>
|
|
|
830 </tr>
|
|
|
831 <tr>
|
|
|
832 <td>GAGGC</td>
|
|
|
833 <td>295</td>
|
|
|
834 <td>1.8599615</td>
|
|
|
835 <td>6.301676</td>
|
|
|
836 <td>22</td>
|
|
|
837 </tr>
|
|
|
838 <tr>
|
|
|
839 <td>TCTGT</td>
|
|
|
840 <td>455</td>
|
|
|
841 <td>1.8500755</td>
|
|
|
842 <td>5.0850673</td>
|
|
|
843 <td>49</td>
|
|
|
844 </tr>
|
|
|
845 <tr>
|
|
|
846 <td>CCTGC</td>
|
|
|
847 <td>275</td>
|
|
|
848 <td>1.8219992</td>
|
|
|
849 <td>9.93301</td>
|
|
|
850 <td>6</td>
|
|
|
851 </tr>
|
|
|
852 <tr>
|
|
|
853 <td>CCTCT</td>
|
|
|
854 <td>350</td>
|
|
|
855 <td>1.8125799</td>
|
|
|
856 <td>7.7641597</td>
|
|
|
857 <td>2</td>
|
|
|
858 </tr>
|
|
|
859 <tr>
|
|
|
860 <td>TGCCT</td>
|
|
|
861 <td>345</td>
|
|
|
862 <td>1.7906713</td>
|
|
|
863 <td>5.187652</td>
|
|
|
864 <td>12</td>
|
|
|
865 </tr>
|
|
|
866 <tr>
|
|
|
867 <td>TTCCC</td>
|
|
|
868 <td>345</td>
|
|
|
869 <td>1.7866857</td>
|
|
|
870 <td>6.470133</td>
|
|
|
871 <td>18</td>
|
|
|
872 </tr>
|
|
|
873 <tr>
|
|
|
874 <td>GAGGG</td>
|
|
|
875 <td>280</td>
|
|
|
876 <td>1.769325</td>
|
|
|
877 <td>6.3283887</td>
|
|
|
878 <td>41</td>
|
|
|
879 </tr>
|
|
|
880 <tr>
|
|
|
881 <td>CACAC</td>
|
|
|
882 <td>380</td>
|
|
|
883 <td>1.7663432</td>
|
|
|
884 <td>5.813131</td>
|
|
|
885 <td>33</td>
|
|
|
886 </tr>
|
|
|
887 <tr>
|
|
|
888 <td>TCTGC</td>
|
|
|
889 <td>340</td>
|
|
|
890 <td>1.7647195</td>
|
|
|
891 <td>5.1980486</td>
|
|
|
892 <td>42</td>
|
|
|
893 </tr>
|
|
|
894 <tr>
|
|
|
895 <td>CTGGC</td>
|
|
|
896 <td>265</td>
|
|
|
897 <td>1.7596608</td>
|
|
|
898 <td>6.6434207</td>
|
|
|
899 <td>43</td>
|
|
|
900 </tr>
|
|
|
901 <tr>
|
|
|
902 <td>TTCAG</td>
|
|
|
903 <td>455</td>
|
|
|
904 <td>1.7527524</td>
|
|
|
905 <td>9.6255</td>
|
|
|
906 <td>12</td>
|
|
|
907 </tr>
|
|
|
908 <tr>
|
|
|
909 <td>AGCCA</td>
|
|
|
910 <td>375</td>
|
|
|
911 <td>1.74699</td>
|
|
|
912 <td>5.8319354</td>
|
|
|
913 <td>39</td>
|
|
|
914 </tr>
|
|
|
915 <tr>
|
|
|
916 <td>CTCTC</td>
|
|
|
917 <td>335</td>
|
|
|
918 <td>1.7348979</td>
|
|
|
919 <td>5.1761065</td>
|
|
|
920 <td>3</td>
|
|
|
921 </tr>
|
|
|
922 <tr>
|
|
|
923 <td>GGGTG</td>
|
|
|
924 <td>260</td>
|
|
|
925 <td>1.7341703</td>
|
|
|
926 <td>8.333022</td>
|
|
|
927 <td>28</td>
|
|
|
928 </tr>
|
|
|
929 <tr>
|
|
|
930 <td>TGGGG</td>
|
|
|
931 <td>260</td>
|
|
|
932 <td>1.7341703</td>
|
|
|
933 <td>8.349721</td>
|
|
|
934 <td>39</td>
|
|
|
935 </tr>
|
|
|
936 <tr>
|
|
|
937 <td>GTGGG</td>
|
|
|
938 <td>255</td>
|
|
|
939 <td>1.7008208</td>
|
|
|
940 <td>6.6730905</td>
|
|
|
941 <td>31</td>
|
|
|
942 </tr>
|
|
|
943 <tr>
|
|
|
944 <td>GGCCA</td>
|
|
|
945 <td>270</td>
|
|
|
946 <td>1.698549</td>
|
|
|
947 <td>6.293945</td>
|
|
|
948 <td>43</td>
|
|
|
949 </tr>
|
|
|
950 <tr>
|
|
|
951 <td>GCCCC</td>
|
|
|
952 <td>200</td>
|
|
|
953 <td>1.6914694</td>
|
|
|
954 <td>6.3460584</td>
|
|
|
955 <td>32</td>
|
|
|
956 </tr>
|
|
|
957 <tr>
|
|
|
958 <td>CTTTG</td>
|
|
|
959 <td>415</td>
|
|
|
960 <td>1.6874313</td>
|
|
|
961 <td>5.0799813</td>
|
|
|
962 <td>2</td>
|
|
|
963 </tr>
|
|
|
964 <tr>
|
|
|
965 <td>ACACA</td>
|
|
|
966 <td>485</td>
|
|
|
967 <td>1.6731915</td>
|
|
|
968 <td>5.1721287</td>
|
|
|
969 <td>14</td>
|
|
|
970 </tr>
|
|
|
971 <tr>
|
|
|
972 <td>GTGGT</td>
|
|
|
973 <td>320</td>
|
|
|
974 <td>1.6683302</td>
|
|
|
975 <td>5.216037</td>
|
|
|
976 <td>31</td>
|
|
|
977 </tr>
|
|
|
978 <tr>
|
|
|
979 <td>CTCAC</td>
|
|
|
980 <td>340</td>
|
|
|
981 <td>1.6681659</td>
|
|
|
982 <td>7.363092</td>
|
|
|
983 <td>31</td>
|
|
|
984 </tr>
|
|
|
985 <tr>
|
|
|
986 <td>TGCTT</td>
|
|
|
987 <td>410</td>
|
|
|
988 <td>1.6671008</td>
|
|
|
989 <td>5.090162</td>
|
|
|
990 <td>40</td>
|
|
|
991 </tr>
|
|
|
992 <tr>
|
|
|
993 <td>GGGGC</td>
|
|
|
994 <td>195</td>
|
|
|
995 <td>1.6602434</td>
|
|
|
996 <td>8.526694</td>
|
|
|
997 <td>40</td>
|
|
|
998 </tr>
|
|
|
999 <tr>
|
|
|
1000 <td>AGTGG</td>
|
|
|
1001 <td>335</td>
|
|
|
1002 <td>1.654657</td>
|
|
|
1003 <td>6.1708827</td>
|
|
|
1004 <td>3</td>
|
|
|
1005 </tr>
|
|
|
1006 <tr>
|
|
|
1007 <td>TTCTG</td>
|
|
|
1008 <td>405</td>
|
|
|
1009 <td>1.6467704</td>
|
|
|
1010 <td>5.0850663</td>
|
|
|
1011 <td>49</td>
|
|
|
1012 </tr>
|
|
|
1013 <tr>
|
|
|
1014 <td>AGAAG</td>
|
|
|
1015 <td>475</td>
|
|
|
1016 <td>1.6460115</td>
|
|
|
1017 <td>5.1952276</td>
|
|
|
1018 <td>22</td>
|
|
|
1019 </tr>
|
|
|
1020 <tr>
|
|
|
1021 <td>ACTCC</td>
|
|
|
1022 <td>335</td>
|
|
|
1023 <td>1.6436341</td>
|
|
|
1024 <td>6.1297736</td>
|
|
|
1025 <td>10</td>
|
|
|
1026 </tr>
|
|
|
1027 <tr>
|
|
|
1028 <td>GGCTC</td>
|
|
|
1029 <td>245</td>
|
|
|
1030 <td>1.6268562</td>
|
|
|
1031 <td>8.304275</td>
|
|
|
1032 <td>46</td>
|
|
|
1033 </tr>
|
|
|
1034 <tr>
|
|
|
1035 <td>TGGCA</td>
|
|
|
1036 <td>330</td>
|
|
|
1037 <td>1.6263331</td>
|
|
|
1038 <td>8.637284</td>
|
|
|
1039 <td>40</td>
|
|
|
1040 </tr>
|
|
|
1041 <tr>
|
|
|
1042 <td>TCCTT</td>
|
|
|
1043 <td>400</td>
|
|
|
1044 <td>1.6228201</td>
|
|
|
1045 <td>6.0946</td>
|
|
|
1046 <td>40</td>
|
|
|
1047 </tr>
|
|
|
1048 <tr>
|
|
|
1049 <td>TCTGG</td>
|
|
|
1050 <td>310</td>
|
|
|
1051 <td>1.612598</td>
|
|
|
1052 <td>5.204428</td>
|
|
|
1053 <td>43</td>
|
|
|
1054 </tr>
|
|
|
1055 <tr>
|
|
|
1056 <td>GGGGA</td>
|
|
|
1057 <td>255</td>
|
|
|
1058 <td>1.6113497</td>
|
|
|
1059 <td>6.3157325</td>
|
|
|
1060 <td>7</td>
|
|
|
1061 </tr>
|
|
|
1062 <tr>
|
|
|
1063 <td>CTGCT</td>
|
|
|
1064 <td>310</td>
|
|
|
1065 <td>1.609009</td>
|
|
|
1066 <td>6.4845653</td>
|
|
|
1067 <td>3</td>
|
|
|
1068 </tr>
|
|
|
1069 <tr>
|
|
|
1070 <td>CCCAA</td>
|
|
|
1071 <td>345</td>
|
|
|
1072 <td>1.6036536</td>
|
|
|
1073 <td>5.8073177</td>
|
|
|
1074 <td>10</td>
|
|
|
1075 </tr>
|
|
|
1076 <tr>
|
|
|
1077 <td>TGGCC</td>
|
|
|
1078 <td>240</td>
|
|
|
1079 <td>1.5936551</td>
|
|
|
1080 <td>6.6434207</td>
|
|
|
1081 <td>49</td>
|
|
|
1082 </tr>
|
|
|
1083 <tr>
|
|
|
1084 <td>GTGCT</td>
|
|
|
1085 <td>305</td>
|
|
|
1086 <td>1.5865883</td>
|
|
|
1087 <td>5.220104</td>
|
|
|
1088 <td>50</td>
|
|
|
1089 </tr>
|
|
|
1090 <tr>
|
|
|
1091 <td>GCTTT</td>
|
|
|
1092 <td>390</td>
|
|
|
1093 <td>1.5857788</td>
|
|
|
1094 <td>6.1081944</td>
|
|
|
1095 <td>41</td>
|
|
|
1096 </tr>
|
|
|
1097 <tr>
|
|
|
1098 <td>CCACA</td>
|
|
|
1099 <td>335</td>
|
|
|
1100 <td>1.5571709</td>
|
|
|
1101 <td>5.813131</td>
|
|
|
1102 <td>30</td>
|
|
|
1103 </tr>
|
|
|
1104 <tr>
|
|
|
1105 <td>CCTTC</td>
|
|
|
1106 <td>300</td>
|
|
|
1107 <td>1.5536399</td>
|
|
|
1108 <td>6.4701333</td>
|
|
|
1109 <td>17</td>
|
|
|
1110 </tr>
|
|
|
1111 <tr>
|
|
|
1112 <td>CCACT</td>
|
|
|
1113 <td>315</td>
|
|
|
1114 <td>1.5455065</td>
|
|
|
1115 <td>6.135909</td>
|
|
|
1116 <td>32</td>
|
|
|
1117 </tr>
|
|
|
1118 <tr>
|
|
|
1119 <td>TCTTC</td>
|
|
|
1120 <td>380</td>
|
|
|
1121 <td>1.5416791</td>
|
|
|
1122 <td>5.0737495</td>
|
|
|
1123 <td>49</td>
|
|
|
1124 </tr>
|
|
|
1125 <tr>
|
|
|
1126 <td>GTTCA</td>
|
|
|
1127 <td>400</td>
|
|
|
1128 <td>1.5408814</td>
|
|
|
1129 <td>7.700401</td>
|
|
|
1130 <td>11</td>
|
|
|
1131 </tr>
|
|
|
1132 <tr>
|
|
|
1133 <td>AGGCA</td>
|
|
|
1134 <td>330</td>
|
|
|
1135 <td>1.5407803</td>
|
|
|
1136 <td>5.8332543</td>
|
|
|
1137 <td>6</td>
|
|
|
1138 </tr>
|
|
|
1139 <tr>
|
|
|
1140 <td>AAAAG</td>
|
|
|
1141 <td>600</td>
|
|
|
1142 <td>1.5396972</td>
|
|
|
1143 <td>5.782427</td>
|
|
|
1144 <td>41</td>
|
|
|
1145 </tr>
|
|
|
1146 <tr>
|
|
|
1147 <td>GCACA</td>
|
|
|
1148 <td>330</td>
|
|
|
1149 <td>1.5373511</td>
|
|
|
1150 <td>5.8202715</td>
|
|
|
1151 <td>18</td>
|
|
|
1152 </tr>
|
|
|
1153 <tr>
|
|
|
1154 <td>ATGCC</td>
|
|
|
1155 <td>305</td>
|
|
|
1156 <td>1.4997808</td>
|
|
|
1157 <td>12.286893</td>
|
|
|
1158 <td>22</td>
|
|
|
1159 </tr>
|
|
|
1160 <tr>
|
|
|
1161 <td>GAAGG</td>
|
|
|
1162 <td>320</td>
|
|
|
1163 <td>1.4974226</td>
|
|
|
1164 <td>5.8462653</td>
|
|
|
1165 <td>8</td>
|
|
|
1166 </tr>
|
|
|
1167 <tr>
|
|
|
1168 <td>GAGAG</td>
|
|
|
1169 <td>320</td>
|
|
|
1170 <td>1.4974226</td>
|
|
|
1171 <td>5.857981</td>
|
|
|
1172 <td>41</td>
|
|
|
1173 </tr>
|
|
|
1174 <tr>
|
|
|
1175 <td>TGTGC</td>
|
|
|
1176 <td>285</td>
|
|
|
1177 <td>1.4825499</td>
|
|
|
1178 <td>5.2044287</td>
|
|
|
1179 <td>29</td>
|
|
|
1180 </tr>
|
|
|
1181 <tr>
|
|
|
1182 <td>TTGGC</td>
|
|
|
1183 <td>285</td>
|
|
|
1184 <td>1.4825495</td>
|
|
|
1185 <td>5.199223</td>
|
|
|
1186 <td>15</td>
|
|
|
1187 </tr>
|
|
|
1188 <tr>
|
|
|
1189 <td>GGGAT</td>
|
|
|
1190 <td>300</td>
|
|
|
1191 <td>1.4817826</td>
|
|
|
1192 <td>7.40506</td>
|
|
|
1193 <td>21</td>
|
|
|
1194 </tr>
|
|
|
1195 <tr>
|
|
|
1196 <td>AGCTG</td>
|
|
|
1197 <td>300</td>
|
|
|
1198 <td>1.4784846</td>
|
|
|
1199 <td>6.1633124</td>
|
|
|
1200 <td>30</td>
|
|
|
1201 </tr>
|
|
|
1202 <tr>
|
|
|
1203 <td>AACAG</td>
|
|
|
1204 <td>425</td>
|
|
|
1205 <td>1.4694693</td>
|
|
|
1206 <td>5.1836653</td>
|
|
|
1207 <td>10</td>
|
|
|
1208 </tr>
|
|
|
1209 <tr>
|
|
|
1210 <td>GAGTG</td>
|
|
|
1211 <td>295</td>
|
|
|
1212 <td>1.4570862</td>
|
|
|
1213 <td>6.1770606</td>
|
|
|
1214 <td>33</td>
|
|
|
1215 </tr>
|
|
|
1216 <tr>
|
|
|
1217 <td>GGGAC</td>
|
|
|
1218 <td>230</td>
|
|
|
1219 <td>1.4501395</td>
|
|
|
1220 <td>6.3143044</td>
|
|
|
1221 <td>40</td>
|
|
|
1222 </tr>
|
|
|
1223 <tr>
|
|
|
1224 <td>GTGTT</td>
|
|
|
1225 <td>355</td>
|
|
|
1226 <td>1.4466851</td>
|
|
|
1227 <td>6.134112</td>
|
|
|
1228 <td>50</td>
|
|
|
1229 </tr>
|
|
|
1230 <tr>
|
|
|
1231 <td>TTTGG</td>
|
|
|
1232 <td>355</td>
|
|
|
1233 <td>1.4466851</td>
|
|
|
1234 <td>6.1095753</td>
|
|
|
1235 <td>3</td>
|
|
|
1236 </tr>
|
|
|
1237 <tr>
|
|
|
1238 <td>TCTTT</td>
|
|
|
1239 <td>455</td>
|
|
|
1240 <td>1.4461157</td>
|
|
|
1241 <td>5.5590916</td>
|
|
|
1242 <td>1</td>
|
|
|
1243 </tr>
|
|
|
1244 <tr>
|
|
|
1245 <td>GAGAT</td>
|
|
|
1246 <td>395</td>
|
|
|
1247 <td>1.4447913</td>
|
|
|
1248 <td>6.397646</td>
|
|
|
1249 <td>27</td>
|
|
|
1250 </tr>
|
|
|
1251 <tr>
|
|
|
1252 <td>CAAAA</td>
|
|
|
1253 <td>560</td>
|
|
|
1254 <td>1.4338523</td>
|
|
|
1255 <td>5.123362</td>
|
|
|
1256 <td>31</td>
|
|
|
1257 </tr>
|
|
|
1258 <tr>
|
|
|
1259 <td>GGTTC</td>
|
|
|
1260 <td>275</td>
|
|
|
1261 <td>1.4305303</td>
|
|
|
1262 <td>10.398446</td>
|
|
|
1263 <td>10</td>
|
|
|
1264 </tr>
|
|
|
1265 <tr>
|
|
|
1266 <td>CCCTT</td>
|
|
|
1267 <td>275</td>
|
|
|
1268 <td>1.4241698</td>
|
|
|
1269 <td>5.186479</td>
|
|
|
1270 <td>39</td>
|
|
|
1271 </tr>
|
|
|
1272 <tr>
|
|
|
1273 <td>CTGTT</td>
|
|
|
1274 <td>350</td>
|
|
|
1275 <td>1.4231348</td>
|
|
|
1276 <td>5.0799813</td>
|
|
|
1277 <td>10</td>
|
|
|
1278 </tr>
|
|
|
1279 <tr>
|
|
|
1280 <td>ATGGT</td>
|
|
|
1281 <td>365</td>
|
|
|
1282 <td>1.4091904</td>
|
|
|
1283 <td>6.7596393</td>
|
|
|
1284 <td>47</td>
|
|
|
1285 </tr>
|
|
|
1286 <tr>
|
|
|
1287 <td>TGTTG</td>
|
|
|
1288 <td>345</td>
|
|
|
1289 <td>1.4059336</td>
|
|
|
1290 <td>5.1015162</td>
|
|
|
1291 <td>40</td>
|
|
|
1292 </tr>
|
|
|
1293 <tr>
|
|
|
1294 <td>CTGTC</td>
|
|
|
1295 <td>270</td>
|
|
|
1296 <td>1.4013947</td>
|
|
|
1297 <td>5.198048</td>
|
|
|
1298 <td>39</td>
|
|
|
1299 </tr>
|
|
|
1300 <tr>
|
|
|
1301 <td>GAGAC</td>
|
|
|
1302 <td>300</td>
|
|
|
1303 <td>1.4007094</td>
|
|
|
1304 <td>5.856681</td>
|
|
|
1305 <td>50</td>
|
|
|
1306 </tr>
|
|
|
1307 <tr>
|
|
|
1308 <td>CTTCT</td>
|
|
|
1309 <td>345</td>
|
|
|
1310 <td>1.3996824</td>
|
|
|
1311 <td>7.1246448</td>
|
|
|
1312 <td>50</td>
|
|
|
1313 </tr>
|
|
|
1314 <tr>
|
|
|
1315 <td>GGCCC</td>
|
|
|
1316 <td>165</td>
|
|
|
1317 <td>1.398575</td>
|
|
|
1318 <td>6.353853</td>
|
|
|
1319 <td>2</td>
|
|
|
1320 </tr>
|
|
|
1321 <tr>
|
|
|
1322 <td>TGAGT</td>
|
|
|
1323 <td>360</td>
|
|
|
1324 <td>1.3898867</td>
|
|
|
1325 <td>5.7939773</td>
|
|
|
1326 <td>32</td>
|
|
|
1327 </tr>
|
|
|
1328 <tr>
|
|
|
1329 <td>GGCAC</td>
|
|
|
1330 <td>220</td>
|
|
|
1331 <td>1.3840029</td>
|
|
|
1332 <td>6.2876506</td>
|
|
|
1333 <td>17</td>
|
|
|
1334 </tr>
|
|
|
1335 <tr>
|
|
|
1336 <td>CCTTT</td>
|
|
|
1337 <td>340</td>
|
|
|
1338 <td>1.3793972</td>
|
|
|
1339 <td>5.068676</td>
|
|
|
1340 <td>8</td>
|
|
|
1341 </tr>
|
|
|
1342 <tr>
|
|
|
1343 <td>CCTTG</td>
|
|
|
1344 <td>265</td>
|
|
|
1345 <td>1.3754432</td>
|
|
|
1346 <td>5.187652</td>
|
|
|
1347 <td>18</td>
|
|
|
1348 </tr>
|
|
|
1349 <tr>
|
|
|
1350 <td>TTGAA</td>
|
|
|
1351 <td>475</td>
|
|
|
1352 <td>1.3580486</td>
|
|
|
1353 <td>6.4295163</td>
|
|
|
1354 <td>7</td>
|
|
|
1355 </tr>
|
|
|
1356 <tr>
|
|
|
1357 <td>GAGCG</td>
|
|
|
1358 <td>215</td>
|
|
|
1359 <td>1.3555653</td>
|
|
|
1360 <td>12.603353</td>
|
|
|
1361 <td>6</td>
|
|
|
1362 </tr>
|
|
|
1363 <tr>
|
|
|
1364 <td>AAGGA</td>
|
|
|
1365 <td>390</td>
|
|
|
1366 <td>1.3514621</td>
|
|
|
1367 <td>5.1952276</td>
|
|
|
1368 <td>44</td>
|
|
|
1369 </tr>
|
|
|
1370 <tr>
|
|
|
1371 <td>TTCTT</td>
|
|
|
1372 <td>420</td>
|
|
|
1373 <td>1.3348758</td>
|
|
|
1374 <td>7.941558</td>
|
|
|
1375 <td>4</td>
|
|
|
1376 </tr>
|
|
|
1377 <tr>
|
|
|
1378 <td>GGGGT</td>
|
|
|
1379 <td>200</td>
|
|
|
1380 <td>1.3339773</td>
|
|
|
1381 <td>8.333022</td>
|
|
|
1382 <td>45</td>
|
|
|
1383 </tr>
|
|
|
1384 <tr>
|
|
|
1385 <td>CAGAT</td>
|
|
|
1386 <td>365</td>
|
|
|
1387 <td>1.3320893</td>
|
|
|
1388 <td>5.4769697</td>
|
|
|
1389 <td>34</td>
|
|
|
1390 </tr>
|
|
|
1391 <tr>
|
|
|
1392 <td>CTTGG</td>
|
|
|
1393 <td>255</td>
|
|
|
1394 <td>1.3264918</td>
|
|
|
1395 <td>5.1992235</td>
|
|
|
1396 <td>18</td>
|
|
|
1397 </tr>
|
|
|
1398 <tr>
|
|
|
1399 <td>TGGTT</td>
|
|
|
1400 <td>320</td>
|
|
|
1401 <td>1.3040541</td>
|
|
|
1402 <td>5.091313</td>
|
|
|
1403 <td>25</td>
|
|
|
1404 </tr>
|
|
|
1405 <tr>
|
|
|
1406 <td>TTGGG</td>
|
|
|
1407 <td>250</td>
|
|
|
1408 <td>1.3033829</td>
|
|
|
1409 <td>6.5135255</td>
|
|
|
1410 <td>6</td>
|
|
|
1411 </tr>
|
|
|
1412 <tr>
|
|
|
1413 <td>CTGGT</td>
|
|
|
1414 <td>250</td>
|
|
|
1415 <td>1.3004823</td>
|
|
|
1416 <td>5.204428</td>
|
|
|
1417 <td>48</td>
|
|
|
1418 </tr>
|
|
|
1419 <tr>
|
|
|
1420 <td>GCTCC</td>
|
|
|
1421 <td>195</td>
|
|
|
1422 <td>1.2919631</td>
|
|
|
1423 <td>8.277508</td>
|
|
|
1424 <td>26</td>
|
|
|
1425 </tr>
|
|
|
1426 <tr>
|
|
|
1427 <td>TGATG</td>
|
|
|
1428 <td>330</td>
|
|
|
1429 <td>1.2740628</td>
|
|
|
1430 <td>5.7939773</td>
|
|
|
1431 <td>46</td>
|
|
|
1432 </tr>
|
|
|
1433 <tr>
|
|
|
1434 <td>TGTCC</td>
|
|
|
1435 <td>245</td>
|
|
|
1436 <td>1.2716361</td>
|
|
|
1437 <td>5.187652</td>
|
|
|
1438 <td>21</td>
|
|
|
1439 </tr>
|
|
|
1440 <tr>
|
|
|
1441 <td>GGCTT</td>
|
|
|
1442 <td>240</td>
|
|
|
1443 <td>1.2484628</td>
|
|
|
1444 <td>5.199223</td>
|
|
|
1445 <td>4</td>
|
|
|
1446 </tr>
|
|
|
1447 <tr>
|
|
|
1448 <td>GACAG</td>
|
|
|
1449 <td>265</td>
|
|
|
1450 <td>1.2372932</td>
|
|
|
1451 <td>5.833254</td>
|
|
|
1452 <td>27</td>
|
|
|
1453 </tr>
|
|
|
1454 <tr>
|
|
|
1455 <td>GGTGT</td>
|
|
|
1456 <td>235</td>
|
|
|
1457 <td>1.2251799</td>
|
|
|
1458 <td>5.21082</td>
|
|
|
1459 <td>27</td>
|
|
|
1460 </tr>
|
|
|
1461 <tr>
|
|
|
1462 <td>AATGC</td>
|
|
|
1463 <td>335</td>
|
|
|
1464 <td>1.2226022</td>
|
|
|
1465 <td>10.031068</td>
|
|
|
1466 <td>21</td>
|
|
|
1467 </tr>
|
|
|
1468 <tr>
|
|
|
1469 <td>TTTGC</td>
|
|
|
1470 <td>300</td>
|
|
|
1471 <td>1.2198299</td>
|
|
|
1472 <td>5.0799813</td>
|
|
|
1473 <td>9</td>
|
|
|
1474 </tr>
|
|
|
1475 <tr>
|
|
|
1476 <td>GTCCT</td>
|
|
|
1477 <td>230</td>
|
|
|
1478 <td>1.1937809</td>
|
|
|
1479 <td>5.1928453</td>
|
|
|
1480 <td>47</td>
|
|
|
1481 </tr>
|
|
|
1482 <tr>
|
|
|
1483 <td>GGGCC</td>
|
|
|
1484 <td>140</td>
|
|
|
1485 <td>1.1893166</td>
|
|
|
1486 <td>6.3744006</td>
|
|
|
1487 <td>43</td>
|
|
|
1488 </tr>
|
|
|
1489 <tr>
|
|
|
1490 <td>ATCCC</td>
|
|
|
1491 <td>240</td>
|
|
|
1492 <td>1.1775287</td>
|
|
|
1493 <td>6.135909</td>
|
|
|
1494 <td>43</td>
|
|
|
1495 </tr>
|
|
|
1496 <tr>
|
|
|
1497 <td>GCTCT</td>
|
|
|
1498 <td>225</td>
|
|
|
1499 <td>1.1678292</td>
|
|
|
1500 <td>7.789268</td>
|
|
|
1501 <td>47</td>
|
|
|
1502 </tr>
|
|
|
1503 <tr>
|
|
|
1504 <td>AGCCC</td>
|
|
|
1505 <td>185</td>
|
|
|
1506 <td>1.1612303</td>
|
|
|
1507 <td>6.2799363</td>
|
|
|
1508 <td>31</td>
|
|
|
1509 </tr>
|
|
|
1510 <tr>
|
|
|
1511 <td>GATCG</td>
|
|
|
1512 <td>235</td>
|
|
|
1513 <td>1.1581463</td>
|
|
|
1514 <td>6.1633124</td>
|
|
|
1515 <td>29</td>
|
|
|
1516 </tr>
|
|
|
1517 <tr>
|
|
|
1518 <td>ACCCT</td>
|
|
|
1519 <td>230</td>
|
|
|
1520 <td>1.128465</td>
|
|
|
1521 <td>6.129773</td>
|
|
|
1522 <td>10</td>
|
|
|
1523 </tr>
|
|
|
1524 <tr>
|
|
|
1525 <td>GTTGG</td>
|
|
|
1526 <td>215</td>
|
|
|
1527 <td>1.1209095</td>
|
|
|
1528 <td>5.2160373</td>
|
|
|
1529 <td>47</td>
|
|
|
1530 </tr>
|
|
|
1531 <tr>
|
|
|
1532 <td>AGCTC</td>
|
|
|
1533 <td>225</td>
|
|
|
1534 <td>1.1063956</td>
|
|
|
1535 <td>6.1434464</td>
|
|
|
1536 <td>25</td>
|
|
|
1537 </tr>
|
|
|
1538 <tr>
|
|
|
1539 <td>CCCAT</td>
|
|
|
1540 <td>225</td>
|
|
|
1541 <td>1.1039332</td>
|
|
|
1542 <td>6.129773</td>
|
|
|
1543 <td>21</td>
|
|
|
1544 </tr>
|
|
|
1545 <tr>
|
|
|
1546 <td>CGGAA</td>
|
|
|
1547 <td>235</td>
|
|
|
1548 <td>1.0972222</td>
|
|
|
1549 <td>9.333206</td>
|
|
|
1550 <td>1</td>
|
|
|
1551 </tr>
|
|
|
1552 <tr>
|
|
|
1553 <td>TCTTG</td>
|
|
|
1554 <td>265</td>
|
|
|
1555 <td>1.0775164</td>
|
|
|
1556 <td>5.0799813</td>
|
|
|
1557 <td>21</td>
|
|
|
1558 </tr>
|
|
|
1559 <tr>
|
|
|
1560 <td>ATGCA</td>
|
|
|
1561 <td>295</td>
|
|
|
1562 <td>1.0766199</td>
|
|
|
1563 <td>5.4714913</td>
|
|
|
1564 <td>37</td>
|
|
|
1565 </tr>
|
|
|
1566 <tr>
|
|
|
1567 <td>GCTTG</td>
|
|
|
1568 <td>205</td>
|
|
|
1569 <td>1.0663953</td>
|
|
|
1570 <td>5.199223</td>
|
|
|
1571 <td>2</td>
|
|
|
1572 </tr>
|
|
|
1573 <tr>
|
|
|
1574 <td>AGCGG</td>
|
|
|
1575 <td>165</td>
|
|
|
1576 <td>1.0403174</td>
|
|
|
1577 <td>12.603352</td>
|
|
|
1578 <td>7</td>
|
|
|
1579 </tr>
|
|
|
1580 <tr>
|
|
|
1581 <td>TTGCC</td>
|
|
|
1582 <td>200</td>
|
|
|
1583 <td>1.0380702</td>
|
|
|
1584 <td>5.1876516</td>
|
|
|
1585 <td>3</td>
|
|
|
1586 </tr>
|
|
|
1587 <tr>
|
|
|
1588 <td>AACCT</td>
|
|
|
1589 <td>285</td>
|
|
|
1590 <td>1.0378094</td>
|
|
|
1591 <td>5.4593143</td>
|
|
|
1592 <td>13</td>
|
|
|
1593 </tr>
|
|
|
1594 <tr>
|
|
|
1595 <td>AACCA</td>
|
|
|
1596 <td>300</td>
|
|
|
1597 <td>1.0349638</td>
|
|
|
1598 <td>5.1721287</td>
|
|
|
1599 <td>22</td>
|
|
|
1600 </tr>
|
|
|
1601 <tr>
|
|
|
1602 <td>CCGAG</td>
|
|
|
1603 <td>160</td>
|
|
|
1604 <td>1.0065476</td>
|
|
|
1605 <td>12.575301</td>
|
|
|
1606 <td>25</td>
|
|
|
1607 </tr>
|
|
|
1608 <tr>
|
|
|
1609 <td>GTTCC</td>
|
|
|
1610 <td>190</td>
|
|
|
1611 <td>0.9861668</td>
|
|
|
1612 <td>6.4845653</td>
|
|
|
1613 <td>27</td>
|
|
|
1614 </tr>
|
|
|
1615 <tr>
|
|
|
1616 <td>ACTCA</td>
|
|
|
1617 <td>270</td>
|
|
|
1618 <td>0.983188</td>
|
|
|
1619 <td>5.4593153</td>
|
|
|
1620 <td>11</td>
|
|
|
1621 </tr>
|
|
|
1622 <tr>
|
|
|
1623 <td>CTCAT</td>
|
|
|
1624 <td>255</td>
|
|
|
1625 <td>0.9801258</td>
|
|
|
1626 <td>5.7624474</td>
|
|
|
1627 <td>4</td>
|
|
|
1628 </tr>
|
|
|
1629 <tr>
|
|
|
1630 <td>GAACC</td>
|
|
|
1631 <td>210</td>
|
|
|
1632 <td>0.9783144</td>
|
|
|
1633 <td>5.820272</td>
|
|
|
1634 <td>25</td>
|
|
|
1635 </tr>
|
|
|
1636 <tr>
|
|
|
1637 <td>GGCGG</td>
|
|
|
1638 <td>110</td>
|
|
|
1639 <td>0.93654746</td>
|
|
|
1640 <td>10.637051</td>
|
|
|
1641 <td>44</td>
|
|
|
1642 </tr>
|
|
|
1643 <tr>
|
|
|
1644 <td>GCGGG</td>
|
|
|
1645 <td>110</td>
|
|
|
1646 <td>0.93654746</td>
|
|
|
1647 <td>6.3886194</td>
|
|
|
1648 <td>36</td>
|
|
|
1649 </tr>
|
|
|
1650 <tr>
|
|
|
1651 <td>ATCGG</td>
|
|
|
1652 <td>190</td>
|
|
|
1653 <td>0.93637353</td>
|
|
|
1654 <td>6.163312</td>
|
|
|
1655 <td>30</td>
|
|
|
1656 </tr>
|
|
|
1657 <tr>
|
|
|
1658 <td>GTCTG</td>
|
|
|
1659 <td>180</td>
|
|
|
1660 <td>0.9363471</td>
|
|
|
1661 <td>5.2096424</td>
|
|
|
1662 <td>41</td>
|
|
|
1663 </tr>
|
|
|
1664 <tr>
|
|
|
1665 <td>GCGGT</td>
|
|
|
1666 <td>140</td>
|
|
|
1667 <td>0.93170583</td>
|
|
|
1668 <td>13.303162</td>
|
|
|
1669 <td>8</td>
|
|
|
1670 </tr>
|
|
|
1671 <tr>
|
|
|
1672 <td>CGGGG</td>
|
|
|
1673 <td>105</td>
|
|
|
1674 <td>0.8939771</td>
|
|
|
1675 <td>6.3886194</td>
|
|
|
1676 <td>46</td>
|
|
|
1677 </tr>
|
|
|
1678 <tr>
|
|
|
1679 <td>GGGCG</td>
|
|
|
1680 <td>105</td>
|
|
|
1681 <td>0.8939771</td>
|
|
|
1682 <td>8.518159</td>
|
|
|
1683 <td>43</td>
|
|
|
1684 </tr>
|
|
|
1685 <tr>
|
|
|
1686 <td>TCGGA</td>
|
|
|
1687 <td>170</td>
|
|
|
1688 <td>0.83780795</td>
|
|
|
1689 <td>7.395975</td>
|
|
|
1690 <td>31</td>
|
|
|
1691 </tr>
|
|
|
1692 <tr>
|
|
|
1693 <td>CTTGT</td>
|
|
|
1694 <td>205</td>
|
|
|
1695 <td>0.83355045</td>
|
|
|
1696 <td>5.0850673</td>
|
|
|
1697 <td>38</td>
|
|
|
1698 </tr>
|
|
|
1699 <tr>
|
|
|
1700 <td>TGCCG</td>
|
|
|
1701 <td>125</td>
|
|
|
1702 <td>0.83002883</td>
|
|
|
1703 <td>14.93275</td>
|
|
|
1704 <td>23</td>
|
|
|
1705 </tr>
|
|
|
1706 <tr>
|
|
|
1707 <td>AGGCG</td>
|
|
|
1708 <td>125</td>
|
|
|
1709 <td>0.7881193</td>
|
|
|
1710 <td>6.3016763</td>
|
|
|
1711 <td>15</td>
|
|
|
1712 </tr>
|
|
|
1713 <tr>
|
|
|
1714 <td>CGGTT</td>
|
|
|
1715 <td>150</td>
|
|
|
1716 <td>0.78028923</td>
|
|
|
1717 <td>10.398446</td>
|
|
|
1718 <td>9</td>
|
|
|
1719 </tr>
|
|
|
1720 <tr>
|
|
|
1721 <td>GTGAC</td>
|
|
|
1722 <td>150</td>
|
|
|
1723 <td>0.7392424</td>
|
|
|
1724 <td>6.163313</td>
|
|
|
1725 <td>32</td>
|
|
|
1726 </tr>
|
|
|
1727 <tr>
|
|
|
1728 <td>GCCGA</td>
|
|
|
1729 <td>115</td>
|
|
|
1730 <td>0.723456</td>
|
|
|
1731 <td>12.575301</td>
|
|
|
1732 <td>24</td>
|
|
|
1733 </tr>
|
|
|
1734 <tr>
|
|
|
1735 <td>CCCGC</td>
|
|
|
1736 <td>85</td>
|
|
|
1737 <td>0.7188745</td>
|
|
|
1738 <td>6.3460584</td>
|
|
|
1739 <td>30</td>
|
|
|
1740 </tr>
|
|
|
1741 <tr>
|
|
|
1742 <td>CCCCG</td>
|
|
|
1743 <td>85</td>
|
|
|
1744 <td>0.7188745</td>
|
|
|
1745 <td>10.576764</td>
|
|
|
1746 <td>29</td>
|
|
|
1747 </tr>
|
|
|
1748 <tr>
|
|
|
1749 <td>CGAGA</td>
|
|
|
1750 <td>135</td>
|
|
|
1751 <td>0.6303192</td>
|
|
|
1752 <td>9.333206</td>
|
|
|
1753 <td>26</td>
|
|
|
1754 </tr>
|
|
|
1755 <tr>
|
|
|
1756 <td>CGGGA</td>
|
|
|
1757 <td>90</td>
|
|
|
1758 <td>0.5674459</td>
|
|
|
1759 <td>6.301676</td>
|
|
|
1760 <td>24</td>
|
|
|
1761 </tr>
|
|
|
1762 <tr>
|
|
|
1763 <td>CACGG</td>
|
|
|
1764 <td>85</td>
|
|
|
1765 <td>0.5347284</td>
|
|
|
1766 <td>6.2876506</td>
|
|
|
1767 <td>37</td>
|
|
|
1768 </tr>
|
|
|
1769 <tr>
|
|
|
1770 <td>CGCCT</td>
|
|
|
1771 <td>80</td>
|
|
|
1772 <td>0.5300361</td>
|
|
|
1773 <td>6.6286345</td>
|
|
|
1774 <td>30</td>
|
|
|
1775 </tr>
|
|
|
1776 <tr>
|
|
|
1777 <td>CCGCA</td>
|
|
|
1778 <td>75</td>
|
|
|
1779 <td>0.47076905</td>
|
|
|
1780 <td>6.2799363</td>
|
|
|
1781 <td>36</td>
|
|
|
1782 </tr>
|
|
|
1783 <tr>
|
|
|
1784 <td>CGTTG</td>
|
|
|
1785 <td>40</td>
|
|
|
1786 <td>0.20807713</td>
|
|
|
1787 <td>5.2044277</td>
|
|
|
1788 <td>46</td>
|
|
|
1789 </tr>
|
|
|
1790 </table>
|
|
|
1791 </div>
|
|
|
1792 </body></html><div class="module"><h2>Files created by FastQC</h2><table cellspacing="2" cellpadding="2">
|
|
|
1793 <tr><td><a href="1000gsample_fastqc.zip">1000gsample_fastqc.zip (312.4 KB)</a></td></tr>
|
|
|
1794 <tr><td><a href="duplication_levels.png">duplication_levels.png (14.5 KB)</a></td></tr>
|
|
|
1795 <tr><td><a href="fastqc_data.txt">fastqc_data.txt (15.0 KB)</a></td></tr>
|
|
|
1796 <tr><td><a href="fastqc_report.html">fastqc_report.html (25.3 KB)</a></td></tr>
|
|
|
1797 <tr><td><a href="kmer_profiles.png">kmer_profiles.png (186.7 KB)</a></td></tr>
|
|
|
1798 <tr><td><a href="per_base_gc_content.png">per_base_gc_content.png (12.1 KB)</a></td></tr>
|
|
|
1799 <tr><td><a href="per_base_n_content.png">per_base_n_content.png (7.4 KB)</a></td></tr>
|
|
|
1800 <tr><td><a href="per_base_quality.png">per_base_quality.png (9.6 KB)</a></td></tr>
|
|
|
1801 <tr><td><a href="per_base_sequence_content.png">per_base_sequence_content.png (23.9 KB)</a></td></tr>
|
|
|
1802 <tr><td><a href="per_sequence_gc_content.png">per_sequence_gc_content.png (29.6 KB)</a></td></tr>
|
|
|
1803 <tr><td><a href="per_sequence_quality.png">per_sequence_quality.png (21.9 KB)</a></td></tr>
|
|
|
1804 <tr><td><a href="rgFastQCSBQEN1.log">rgFastQCSBQEN1.log (1.2 KB)</a></td></tr>
|
|
|
1805 <tr><td><a href="sequence_length_distribution.png">sequence_length_distribution.png (18.9 KB)</a></td></tr>
|
|
|
1806 <tr><td><a href="summary.txt">summary.txt (509 B)</a></td></tr>
|
|
|
1807 </table>
|
|
|
1808 <a href="http://www.bioinformatics.bbsrc.ac.uk/projects/fastqc/">FastQC documentation and full attribution is here</a><br/><hr/>
|
|
|
1809 FastQC was run by Galaxy using the rgenetics rgFastQC wrapper - see http://rgenetics.org for details and licensing
|
|
|
1810 </div></div><div class="footer">Produced by <a href="http://www.bioinformatics.babraham.ac.uk/projects/fastqc/">FastQC</a> (version 0.10.1)</div>
|
