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comparison tool_dependencies.xml @ 3:2f3bae9930fd

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ChemicalToolBoX update.
author Bjoern Gruening <bjoern.gruening@gmail.com>
date Mon, 22 Jul 2013 18:39:58 +0200
parents d14139ad5e84
children 25d617cadd7c
comparison
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2:d14139ad5e84 3:2f3bae9930fd
5 </package> 5 </package>
6 <package name="atlas" version="3.10.1"> 6 <package name="atlas" version="3.10.1">
7 <repository changeset_revision="68df9078bf69" name="package_atlas_3_10" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" /> 7 <repository changeset_revision="68df9078bf69" name="package_atlas_3_10" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
8 </package> 8 </package>
9 <package name="numpy" version="1.7.1"> 9 <package name="numpy" version="1.7.1">
10 <repository changeset_revision="62fda117ad4a" name="package_numpy_1_7" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" /> 10 <repository changeset_revision="a0f0a86440ca" name="package_numpy_1_7" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
11 </package> 11 </package>
12 <package name="scipy" version="0.12.0"> 12 <package name="scipy" version="0.12.0">
13 <repository changeset_revision="f4632d8cd4a1" name="package_scipy_0_12" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" /> 13 <repository changeset_revision="e1a5e214c51c" name="package_scipy_0_12" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
14 </package> 14 </package>
15 <package name="matplotlib" version="1.2.1"> 15 <package name="matplotlib" version="1.2.1">
16 <repository changeset_revision="293ce490fc22" name="package_matplotlib_1_2" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" /> 16 <repository changeset_revision="83b2e852544b" name="package_matplotlib_1_2" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
17 </package> 17 </package>
18 18
19 <package name="scikit_learn" version="0.13.1"> 19 <package name="scikit_learn" version="0.13.1">
20 <install version="1.0"> 20 <install version="1.0">
21 <actions> 21 <actions>
25 <package name="atlas" version="3.10.1" /> 25 <package name="atlas" version="3.10.1" />
26 </repository> 26 </repository>
27 <repository changeset_revision="a6b8f46acca7" name="package_lapack_3_4" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu/"> 27 <repository changeset_revision="a6b8f46acca7" name="package_lapack_3_4" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu/">
28 <package name="lapack" version="3.4.2" /> 28 <package name="lapack" version="3.4.2" />
29 </repository> 29 </repository>
30 <repository changeset_revision="62fda117ad4a" name="package_numpy_1_7" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu/"> 30 <repository changeset_revision="a0f0a86440ca" name="package_numpy_1_7" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu/">
31 <package name="numpy" version="1.7.1" /> 31 <package name="numpy" version="1.7.1" />
32 </repository> 32 </repository>
33 <repository changeset_revision="f4632d8cd4a1" name="package_scipy_0_12" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu/"> 33 <repository changeset_revision="e1a5e214c51c" name="package_scipy_0_12" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu/">
34 <package name="scipy" version="0.12.0" /> 34 <package name="scipy" version="0.12.0" />
35 </repository> 35 </repository>
36 <repository changeset_revision="293ce490fc22" name="package_matplotlib_1_2" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu/"> 36 <repository changeset_revision="83b2e852544b" name="package_matplotlib_1_2" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu/">
37 <package name="matplotlib" version="1.2.1" /> 37 <package name="matplotlib" version="1.2.1" />
38 </repository> 38 </repository>
39 </action> 39 </action>
40 40
41 <action type="make_directory">$INSTALL_DIR/lib/python</action> 41 <action type="make_directory">$INSTALL_DIR/lib/python</action>
42 <action language="cheetah" type="template_command"> 42 <action language="cheetah" type="template_command">
43 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; 43 export PYTHONPATH=\$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
44 44
45 #if env.get('ATLAS_LIB_DIR', False): 45 #if env.get('ATLAS_LIB_DIR', False):
46 export ATLAS=$ATLAS_LIB_DIR/libatlas.a &amp;&amp; 46 export ATLAS=$ATLAS_LIB_DIR/libatlas.a &amp;&amp;
47 #end if 47 #end if
48 #if env.get('LAPACK_LIB_DIR', False): 48 #if env.get('LAPACK_LIB_DIR', False):
49 export BLAS=$LAPACK_LIB_DIR/libblas.a &amp;&amp; 49 export BLAS=$LAPACK_LIB_DIR/libblas.a &amp;&amp;
50 export LAPACK=$LAPACK_LIB_DIR/liblapack.a &amp;&amp; 50 export LAPACK=$LAPACK_LIB_DIR/liblapack.a &amp;&amp;
51 #end if 51 #end if
52 52
53 export PATH=$PATH:$PATH_NUMPY &amp;&amp; 53 export PATH=\$PATH:$PATH_NUMPY &amp;&amp;
54 export PYTHONPATH=$PYTHONPATH:$PYTHONPATH_NUMPY:$PYTHONPATH_SCIPY:$PYTHONPATH_MATPLOTLIB &amp;&amp; 54 export PYTHONPATH=\$PYTHONPATH:$PYTHONPATH_NUMPY:$PYTHONPATH_SCIPY:$PYTHONPATH_MATPLOTLIB &amp;&amp;
55 55
56 python setup.py install --home $INSTALL_DIR 56 python setup.py install --home $INSTALL_DIR
57 </action> 57 </action>
58 <action type="set_environment"> 58 <action type="set_environment">
59 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> 59 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>