--- a/macros.xml	Mon Oct 13 10:18:22 2014 -0400
+++ b/macros.xml	Wed Jan 27 10:06:49 2016 -0500
@@ -2,35 +2,37 @@
 <macros>
   <xml name="requirements">
     <requirements>
+      <!-- enable Docker dependency resolving -->
+      <container type="docker">biodckr/openms</container>
       <requirement type="binary">@EXECUTABLE@</requirement>
-      <requirement type="package" version="1.12">openms</requirement>
+      <requirement type="package" version="1.2">openms</requirement>
+      <requirement type="package">xtandem</requirement>
+      <requirement type="package">pepnovo</requirement>
+      <requirement type="package">fido</requirement>
+      <requirement type="package">msgfplus</requirement>
+      <requirement type="package">myrimatch</requirement>
+      <requirement type="package">omssa</requirement>
     </requirements>
   </xml>
   <xml name="stdio">
     <stdio>
       <exit_code range="1:"/>
       <exit_code range=":-1"/>
-      <regex match="Error:"/>
       <regex match="Exception:"/>
     </stdio>
   </xml>
-  <token name="@REFERENCES@">
-
--------
-
-**References**
-
-If you use this Galaxy tool in work leading to a scientific publication please
-cite the following papers:
-
-</token>
-  <xml name="advanced_option">
+  <xml name="references">
+    <citations>
+      <citation type="doi">doi:10.1186/1471-2105-9-163</citation>
+    </citations>
+  </xml>
+  <xml name="advanced_options">
     <conditional name="adv_opts">
       <param name="adv_opts_selector" type="select" label="Advanced Options">
         <option value="basic" selected="True">Hide Advanced Options</option>
         <option value="advanced">Show Advanced Options</option>
       </param>
-      <when value="basic" />
+      <when value="basic"/>
       <when value="advanced">
         <yield/>
       </when>