--- a/TransformationEvaluation.xml	Mon Oct 13 10:18:22 2014 -0400
+++ b/TransformationEvaluation.xml	Wed Jan 27 10:06:49 2016 -0500
@@ -1,37 +1,53 @@
-<?xml version='1.0' encoding='UTF-8'?>
-<tool id="TransformationEvaluation" name="TransformationEvaluation" version="1.12.0">
-  <description>Applies a transformation to a range of values</description>
-  <macros>
-    <token name="@EXECUTABLE@">TransformationEvaluation</token>
-    <import>macros.xml</import>
-  </macros>
-  <expand macro="stdio"/>
-  <expand macro="requirements"/>
-  <command>TransformationEvaluation
+<?xml version="1.0" encoding="UTF-8"?>
+  <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
+  <!--Proposed Tool Section: [Utilities]-->
+  <tool id="TransformationEvaluation" name="TransformationEvaluation" version="2.0.0">
+    <description>Applies a transformation to a range of values</description>
+    <macros>
+      <token name="@EXECUTABLE@">TransformationEvaluation</token>
+      <import>macros.xml</import>
+    </macros>
+    <expand macro="references"/>
+    <expand macro="stdio"/>
+    <expand macro="requirements"/>
+    <command>TransformationEvaluation
 
--in ${param_in}
--out ${param_out}
--min ${param_min}
--max ${param_max}
--step ${param_step}
--threads \${GALAXY_SLOTS:-24} 
+#if $param_in:
+  -in $param_in
+#end if
+#if $param_out:
+  -out $param_out
+#end if
+#if $param_min:
+  -min $param_min
+#end if
+#if $param_max:
+  -max $param_max
+#end if
+#if $param_step:
+  -step $param_step
+#end if
+-threads \${GALAXY_SLOTS:-24}
+#if $adv_opts.adv_opts_selector=='advanced':
+    #if $adv_opts.param_force:
+  -force
+#end if
+#end if
 </command>
-  <inputs>
-    <param name="param_in" type="data" format="" optional="False" label="Input file containing the transformation description" help="(-in)"/>
-    <param name="param_min" type="float" value="0.0" label="Minimum value to transform" help="(-min)"/>
-    <param name="param_max" type="float" value="0.0" label="Maximum value to transform (if at or below 'min', select a suitable maximum based on the transformation description)" help="(-max)"/>
-    <param name="param_step" type="float" min="0.001" optional="True" value="1.0" label="Step size between 'min' and 'max'" help="(-step)"/>
-  </inputs>
-  <outputs>
-    <data name="param_out" label="Output file containing original and transformed values; if empty, output is written to the screen" format="data"/>
-  </outputs>
-  <help>**What it does**
-
-Applies a transformation to a range of values
+    <inputs>
+      <param format="trafoxml" help="(-in) " label="Input file containing the transformation description" name="param_in" optional="False" type="data"/>
+      <param help="(-min) " label="Minimum value to transform" name="param_min" type="float" value="0.0"/>
+      <param help="(-max) " label="Maximum value to transform (if at or below 'min', select a suitable maximum based on the transformation description)" name="param_max" type="float" value="0.0"/>
+      <param help="(-step) " label="Step size between 'min' and 'max'" min="0.001" name="param_step" optional="True" type="float" value="1.0"/>
+      <expand macro="advanced_options">
+        <param checked="false" falsevalue="" help="(-force) " label="Overwrite tool specific checks" name="param_force" optional="True" truevalue="-force" type="boolean"/>
+      </expand>
+    </inputs>
+    <outputs>
+      <data format="trafoxml" name="param_out"/>
+    </outputs>
+    <help>Applies a transformation to a range of values
 
 
-For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_TransformationEvaluation.html
-
-@REFERENCES@
-</help>
-</tool>
+For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_TransformationEvaluation.html</help>
+  </tool>