diff SequenceCoverageCalculator.xml @ 0:3d84209d3178 draft

Uploaded
author bgruening
date Fri, 10 Oct 2014 18:20:03 -0400
parents
children 6ead64a594bd
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/SequenceCoverageCalculator.xml	Fri Oct 10 18:20:03 2014 -0400
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+<?xml version='1.0' encoding='UTF-8'?>
+<tool id="SequenceCoverageCalculator" name="SequenceCoverageCalculator" version="1.12.0">
+  <description>Prints information about idXML files.</description>
+  <macros>
+    <token name="@EXECUTABLE@">SequenceCoverageCalculator</token>
+    <import>macros.xml</import>
+  </macros>
+  <expand macro="stdio"/>
+  <expand macro="requirements"/>
+  <command>SequenceCoverageCalculator
+
+-in_database ${param_in_database}
+-in_peptides ${param_in_peptides}
+-out ${param_out}
+-threads \${GALAXY_SLOTS:-24} 
+</command>
+  <inputs>
+    <param name="param_in_database" type="data" format="fasta" optional="False" label="input file containing the database in FASTA format" help="(-in_database)"/>
+    <param name="param_in_peptides" type="data" format="idXML" optional="False" label="input file containing the identified peptides" help="(-in_peptides)"/>
+  </inputs>
+  <outputs>
+    <data name="param_out" label="Optional text output file. If left out, the output is written to the command line." format="txt"/>
+  </outputs>
+  <help>**What it does**
+
+Prints information about idXML files.
+
+
+For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_SequenceCoverageCalculator.html
+
+@REFERENCES@
+</help>
+</tool>