Mercurial > repos > bgruening > openms
diff SequenceCoverageCalculator.xml @ 0:3d84209d3178 draft
Uploaded
| author | bgruening |
|---|---|
| date | Fri, 10 Oct 2014 18:20:03 -0400 |
| parents | |
| children | 6ead64a594bd |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/SequenceCoverageCalculator.xml Fri Oct 10 18:20:03 2014 -0400 @@ -0,0 +1,33 @@ +<?xml version='1.0' encoding='UTF-8'?> +<tool id="SequenceCoverageCalculator" name="SequenceCoverageCalculator" version="1.12.0"> + <description>Prints information about idXML files.</description> + <macros> + <token name="@EXECUTABLE@">SequenceCoverageCalculator</token> + <import>macros.xml</import> + </macros> + <expand macro="stdio"/> + <expand macro="requirements"/> + <command>SequenceCoverageCalculator + +-in_database ${param_in_database} +-in_peptides ${param_in_peptides} +-out ${param_out} +-threads \${GALAXY_SLOTS:-24} +</command> + <inputs> + <param name="param_in_database" type="data" format="fasta" optional="False" label="input file containing the database in FASTA format" help="(-in_database)"/> + <param name="param_in_peptides" type="data" format="idXML" optional="False" label="input file containing the identified peptides" help="(-in_peptides)"/> + </inputs> + <outputs> + <data name="param_out" label="Optional text output file. If left out, the output is written to the command line." format="txt"/> + </outputs> + <help>**What it does** + +Prints information about idXML files. + + +For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_SequenceCoverageCalculator.html + +@REFERENCES@ +</help> +</tool>
