--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/OpenSwathDIAPreScoring.xml	Fri Oct 10 18:20:03 2014 -0400
@@ -0,0 +1,35 @@
+<?xml version='1.0' encoding='UTF-8'?>
+<tool id="OpenSwathDIAPreScoring" name="OpenSwathDIAPreScoring" version="1.12.0">
+  <description>Scoring spectra using the DIA scores.</description>
+  <macros>
+    <token name="@EXECUTABLE@">OpenSwathDIAPreScoring</token>
+    <import>macros.xml</import>
+  </macros>
+  <expand macro="stdio"/>
+  <expand macro="requirements"/>
+  <command>OpenSwathDIAPreScoring
+
+-tr ${param_tr}
+-out ${param_out}
+-swath_files ${param_swath_files}
+-min_upper_edge_dist ${param_min_upper_edge_dist}
+-threads \${GALAXY_SLOTS:-24} 
+</command>
+  <inputs>
+    <param name="param_tr" type="data" format="" optional="False" label="transition file" help="(-tr)"/>
+    <param name="param_swath_files" type="data" format="mzML" optional="True" size="20" label="Swath files that were used to extract the transitions. If present, SWATH specific scoring will be applied." help="(-swath_files)"/>
+    <param name="param_min_upper_edge_dist" type="float" value="0.0" label="Minimal distance to the edge to still consider a precursor, in Thomson (only in SWATH)" help="(-min_upper_edge_dist)"/>
+  </inputs>
+  <outputs>
+    <data name="param_out" label="output file" format="data"/>
+  </outputs>
+  <help>**What it does**
+
+Scoring spectra using the DIA scores.
+
+
+For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_OpenSwathDIAPreScoring.html
+
+@REFERENCES@
+</help>
+</tool>