diff IDRTCalibration.xml @ 0:3d84209d3178 draft

Uploaded
author bgruening
date Fri, 10 Oct 2014 18:20:03 -0400
parents
children 6ead64a594bd
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/IDRTCalibration.xml	Fri Oct 10 18:20:03 2014 -0400
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+<?xml version='1.0' encoding='UTF-8'?>
+<tool id="IDRTCalibration" name="IDRTCalibration" version="1.12.0">
+  <description>Can be used to calibrate RTs of peptide hits linearly to standards.</description>
+  <macros>
+    <token name="@EXECUTABLE@">IDRTCalibration</token>
+    <import>macros.xml</import>
+  </macros>
+  <expand macro="stdio"/>
+  <expand macro="requirements"/>
+  <command>IDRTCalibration
+
+-in ${param_in}
+-out ${param_out}
+-calibrant_1_reference ${param_calibrant_1_reference}
+-calibrant_2_reference ${param_calibrant_2_reference}
+-calibrant_1_input ${param_calibrant_1_input}
+-calibrant_2_input ${param_calibrant_2_input}
+-threads \${GALAXY_SLOTS:-24} 
+</command>
+  <inputs>
+    <param name="param_in" type="data" format="idXML" optional="False" label="input file " help="(-in)"/>
+    <param name="param_calibrant_1_reference" type="float" value="0.1" label="The RT of the first calibrant in the reference file." help="(-calibrant_1_reference)"/>
+    <param name="param_calibrant_2_reference" type="float" value="0.9" label="The RT of the second calibrant in the reference file." help="(-calibrant_2_reference)"/>
+    <param name="param_calibrant_1_input" type="float" value="-1.0" label="The RT of the first calibrant in the input file. Please note that this value needs to be set. The default value -1.0 is not allowed." help="(-calibrant_1_input)"/>
+    <param name="param_calibrant_2_input" type="float" value="-1.0" label="The RT of the second calibrant in the input file. Please note that this value needs to be set. The default value -1.0 is not allowed." help="(-calibrant_2_input)"/>
+  </inputs>
+  <outputs>
+    <data name="param_out" label="output file " format="idXML"/>
+  </outputs>
+  <help>**What it does**
+
+Can be used to calibrate RTs of peptide hits linearly to standards.
+
+
+For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_IDRTCalibration.html
+
+@REFERENCES@
+</help>
+</tool>