Mercurial > repos > bgruening > openms
diff IDRTCalibration.xml @ 0:3d84209d3178 draft
Uploaded
| author | bgruening |
|---|---|
| date | Fri, 10 Oct 2014 18:20:03 -0400 |
| parents | |
| children | 6ead64a594bd |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/IDRTCalibration.xml Fri Oct 10 18:20:03 2014 -0400 @@ -0,0 +1,39 @@ +<?xml version='1.0' encoding='UTF-8'?> +<tool id="IDRTCalibration" name="IDRTCalibration" version="1.12.0"> + <description>Can be used to calibrate RTs of peptide hits linearly to standards.</description> + <macros> + <token name="@EXECUTABLE@">IDRTCalibration</token> + <import>macros.xml</import> + </macros> + <expand macro="stdio"/> + <expand macro="requirements"/> + <command>IDRTCalibration + +-in ${param_in} +-out ${param_out} +-calibrant_1_reference ${param_calibrant_1_reference} +-calibrant_2_reference ${param_calibrant_2_reference} +-calibrant_1_input ${param_calibrant_1_input} +-calibrant_2_input ${param_calibrant_2_input} +-threads \${GALAXY_SLOTS:-24} +</command> + <inputs> + <param name="param_in" type="data" format="idXML" optional="False" label="input file " help="(-in)"/> + <param name="param_calibrant_1_reference" type="float" value="0.1" label="The RT of the first calibrant in the reference file." help="(-calibrant_1_reference)"/> + <param name="param_calibrant_2_reference" type="float" value="0.9" label="The RT of the second calibrant in the reference file." help="(-calibrant_2_reference)"/> + <param name="param_calibrant_1_input" type="float" value="-1.0" label="The RT of the first calibrant in the input file. Please note that this value needs to be set. The default value -1.0 is not allowed." help="(-calibrant_1_input)"/> + <param name="param_calibrant_2_input" type="float" value="-1.0" label="The RT of the second calibrant in the input file. Please note that this value needs to be set. The default value -1.0 is not allowed." help="(-calibrant_2_input)"/> + </inputs> + <outputs> + <data name="param_out" label="output file " format="idXML"/> + </outputs> + <help>**What it does** + +Can be used to calibrate RTs of peptide hits linearly to standards. + + +For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_IDRTCalibration.html + +@REFERENCES@ +</help> +</tool>
