--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/IDMerger.xml	Fri Oct 10 18:20:03 2014 -0400
@@ -0,0 +1,37 @@
+<?xml version='1.0' encoding='UTF-8'?>
+<tool id="IDMerger" name="IDMerger" version="1.12.0">
+  <description>Merges several protein/peptide identification files into one file.</description>
+  <macros>
+    <token name="@EXECUTABLE@">IDMerger</token>
+    <import>macros.xml</import>
+  </macros>
+  <expand macro="stdio"/>
+  <expand macro="requirements"/>
+  <command>IDMerger
+
+-in ${param_in}
+-out ${param_out}
+-add_to ${param_add_to}
+${param_annotate_file_origin}
+${param_pepxml_protxml}
+-threads \${GALAXY_SLOTS:-24} 
+</command>
+  <inputs>
+    <param name="param_in" type="data" format="idXML" optional="False" size="20" label="Input files separated by blanks" help="(-in)"/>
+    <param name="param_add_to" type="data" format="idXML" optional="True" label="Optional input file. IDs from 'in' are added to this file, but only if the (modified) peptide sequences are not present yet (considering only best hits per spectrum)." help="(-add_to)"/>
+    <param name="param_annotate_file_origin" type="boolean" truevalue="-annotate_file_origin true" falsevalue="-annotate_file_origin false" checked="false" optional="True" label="Store the original filename in each protein/peptide identification (meta value: file_origin)." help="(-annotate_file_origin)"/>
+    <param name="param_pepxml_protxml" type="boolean" truevalue="-pepxml_protxml true" falsevalue="-pepxml_protxml false" checked="false" optional="True" label="Merge idXML files derived from a pepXML and corresponding protXML file.#br#Exactly two input files are expected in this case. Not compatible with 'add_to'." help="(-pepxml_protxml)"/>
+  </inputs>
+  <outputs>
+    <data name="param_out" label="Output file" format="idXML"/>
+  </outputs>
+  <help>**What it does**
+
+Merges several protein/peptide identification files into one file.
+
+
+For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_IDMerger.html
+
+@REFERENCES@
+</help>
+</tool>