Mercurial > repos > bgruening > openms
diff IDExtractor.xml @ 0:3d84209d3178 draft
Uploaded
| author | bgruening |
|---|---|
| date | Fri, 10 Oct 2014 18:20:03 -0400 |
| parents | |
| children | 6ead64a594bd |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/IDExtractor.xml Fri Oct 10 18:20:03 2014 -0400 @@ -0,0 +1,37 @@ +<?xml version='1.0' encoding='UTF-8'?> +<tool id="IDExtractor" name="IDExtractor" version="1.12.0"> + <description>Extracts 'n' peptides randomly or best 'n' from idXML files.</description> + <macros> + <token name="@EXECUTABLE@">IDExtractor</token> + <import>macros.xml</import> + </macros> + <expand macro="stdio"/> + <expand macro="requirements"/> + <command>IDExtractor + +-in ${param_in} +-out ${param_out} +-number_of_peptides ${param_number_of_peptides} +-number_of_rand_invokations ${param_number_of_rand_invokations} +${param_best_hits} +-threads \${GALAXY_SLOTS:-24} +</command> + <inputs> + <param name="param_in" type="data" format="idXML" optional="False" label="input file" help="(-in)"/> + <param name="param_number_of_peptides" type="integer" min="1" optional="True" value="10" label="Number of randomly chosen peptides" help="(-number_of_peptides)"/> + <param name="param_number_of_rand_invokations" type="integer" min="0" optional="True" value="0" label="Number of rand invocations before random draw" help="(-number_of_rand_invokations)"/> + <param name="param_best_hits" type="boolean" truevalue="-best_hits true" falsevalue="-best_hits false" checked="false" optional="True" label="If this flag is set the best n peptides are chosen." help="(-best_hits)"/> + </inputs> + <outputs> + <data name="param_out" label="output file" format="idXML"/> + </outputs> + <help>**What it does** + +Extracts 'n' peptides randomly or best 'n' from idXML files. + + +For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_IDExtractor.html + +@REFERENCES@ +</help> +</tool>
