--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/FFEval.xml	Fri Oct 10 18:20:03 2014 -0400
@@ -0,0 +1,43 @@
+<?xml version='1.0' encoding='UTF-8'?>
+<tool id="FFEval" name="FFEval" version="1.12.0">
+  <description>Evaluation tool for feature detection algorithms.</description>
+  <macros>
+    <token name="@EXECUTABLE@">FFEval</token>
+    <import>macros.xml</import>
+  </macros>
+  <expand macro="stdio"/>
+  <expand macro="requirements"/>
+  <command>FFEval
+
+-in ${param_in}
+-truth ${param_truth}
+-rt_tol ${param_rt_tol}
+-rt_tol_abs ${param_rt_tol_abs}
+-mz_tol ${param_mz_tol}
+-out ${param_out}
+-abort_reasons ${param_abort_reasons}
+-out_roc ${param_out_roc}
+-threads \${GALAXY_SLOTS:-24} 
+</command>
+  <inputs>
+    <param name="param_in" type="data" format="featureXML" optional="False" label="Feature input file, which contains the data to be tested against the truth file." help="(-in)"/>
+    <param name="param_truth" type="data" format="featureXML" optional="False" label="Truth feature file that defines what features should be found." help="(-truth)"/>
+    <param name="param_rt_tol" type="float" min="0.0" optional="True" value="0.3" label="Allowed tolerance of RT relative to average feature RT span." help="(-rt_tol)"/>
+    <param name="param_rt_tol_abs" type="float" min="-1.0" optional="True" value="-1.0" label="Allowed absolute tolerance of RT (overwrites 'rt_tol' if set above zero)." help="(-rt_tol_abs)"/>
+    <param name="param_mz_tol" type="float" min="0.0" optional="True" value="0.25" label="Allowed tolerance in m/z (is divided by charge)." help="(-mz_tol)"/>
+    <param name="param_abort_reasons" type="data" format="featureXML" optional="True" label="Feature file containing seeds with abort reasons." help="(-abort_reasons)"/>
+  </inputs>
+  <outputs>
+    <data name="param_out" label="Feature output file. If given, an annotated input file is written." format="featureXML"/>
+    <data name="param_out_roc" label="If given, a ROC curve file is created (ROC points based on intensity threshold)" format="tabular"/>
+  </outputs>
+  <help>**What it does**
+
+Evaluation tool for feature detection algorithms.
+
+
+For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_FFEval.html
+
+@REFERENCES@
+</help>
+</tool>