--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/DigestorMotif.xml	Fri Oct 10 18:20:03 2014 -0400
@@ -0,0 +1,43 @@
+<?xml version='1.0' encoding='UTF-8'?>
+<tool id="DigestorMotif" name="DigestorMotif" version="1.12.0">
+  <description>digests a protein database in-silico</description>
+  <macros>
+    <token name="@EXECUTABLE@">DigestorMotif</token>
+    <import>macros.xml</import>
+  </macros>
+  <expand macro="stdio"/>
+  <expand macro="requirements"/>
+  <command>DigestorMotif
+
+-in ${param_in}
+-out ${param_out}
+-missed_cleavages ${param_missed_cleavages}
+-mass_accuracy ${param_mass_accuracy}
+-min_length ${param_min_length}
+-out_option ${param_out_option}
+-enzyme ${param_enzyme}
+-motif ${param_motif}
+-threads \${GALAXY_SLOTS:-24} 
+</command>
+  <inputs>
+    <param name="param_in" type="data" format="fasta" optional="False" label="FASTA input file" help="(-in)"/>
+    <param name="param_missed_cleavages" type="integer" min="0" optional="True" value="1" label="the number of allowed missed cleavages" help="(-missed_cleavages)"/>
+    <param name="param_mass_accuracy" type="integer" value="1000" label="give your mass accuracy in ppb" help="(-mass_accuracy)"/>
+    <param name="param_min_length" type="integer" value="6" label="minimum length of peptide" help="(-min_length)"/>
+    <param name="param_out_option" type="integer" value="1" label="indicate 1 (peptide table only), 2 (statistics only) or (both peptide table + statistics)" help="(-out_option)"/>
+    <param name="param_enzyme" type="text" size="20" value="Trypsin" label="the digestion enzyme" help="(-enzyme)"/>
+    <param name="param_motif" type="text" size="20" value="M" label="the motif for the restricted peptidome" help="(-motif)"/>
+  </inputs>
+  <outputs>
+    <data name="param_out" label="output file (peptides)#br#" format="idXML"/>
+  </outputs>
+  <help>**What it does**
+
+digests a protein database in-silico
+
+
+For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_DigestorMotif.html
+
+@REFERENCES@
+</help>
+</tool>