--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/Digestor.xml	Fri Oct 10 18:20:03 2014 -0400
@@ -0,0 +1,51 @@
+<?xml version='1.0' encoding='UTF-8'?>
+<tool id="Digestor" name="Digestor" version="1.12.0">
+  <description>Digests a protein database in-silico.</description>
+  <macros>
+    <token name="@EXECUTABLE@">Digestor</token>
+    <import>macros.xml</import>
+  </macros>
+  <expand macro="stdio"/>
+  <expand macro="requirements"/>
+  <command>Digestor
+
+-in ${param_in}
+-out ${param_out}
+-out_type ${param_out_type}
+-missed_cleavages ${param_missed_cleavages}
+-min_length ${param_min_length}
+-max_length ${param_max_length}
+-enzyme ${param_enzyme}
+-threads \${GALAXY_SLOTS:-24} 
+</command>
+  <inputs>
+    <param name="param_in" type="data" format="fasta" optional="False" label="input file" help="(-in)"/>
+    <param name="param_out_type" type="select" optional="True" label="Set this if you cannot control the filename of 'out', e.g., in TOPPAS." help="(-out_type)">
+      <option value="idXML">idXML</option>
+      <option value="fasta">fasta</option>
+    </param>
+    <param name="param_missed_cleavages" type="integer" min="0" optional="True" value="1" label="The number of allowed missed cleavages" help="(-missed_cleavages)"/>
+    <param name="param_min_length" type="integer" value="6" label="Minimum length of peptide" help="(-min_length)"/>
+    <param name="param_max_length" type="integer" value="40" label="Maximum length of peptide" help="(-max_length)"/>
+    <param name="param_enzyme" type="select" optional="True" value="Trypsin" label="The type of digestion enzyme" help="(-enzyme)">
+      <option value="Trypsin">Trypsin</option>
+      <option value="none">none</option>
+    </param>
+  </inputs>
+  <outputs>
+    <data name="param_out" label="Output file (peptides)" format="fasta">
+      <change_format>
+        <when input="param_out_type" value="idXML" format="idXML"/>
+      </change_format>
+    </data>
+  </outputs>
+  <help>**What it does**
+
+Digests a protein database in-silico.
+
+
+For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_Digestor.html
+
+@REFERENCES@
+</help>
+</tool>