--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/BaselineFilter.xml	Fri Oct 10 18:20:03 2014 -0400
@@ -0,0 +1,51 @@
+<?xml version='1.0' encoding='UTF-8'?>
+<tool id="BaselineFilter" name="BaselineFilter" version="1.12.0">
+  <description>Removes the baseline from profile spectra using a top-hat filter.</description>
+  <macros>
+    <token name="@EXECUTABLE@">BaselineFilter</token>
+    <import>macros.xml</import>
+  </macros>
+  <expand macro="stdio"/>
+  <expand macro="requirements"/>
+  <command>BaselineFilter
+
+-in ${param_in}
+-out ${param_out}
+-struc_elem_length ${param_struc_elem_length}
+-struc_elem_unit ${param_struc_elem_unit}
+-method ${param_method}
+-threads \${GALAXY_SLOTS:-24} 
+</command>
+  <inputs>
+    <param name="param_in" type="data" format="mzML" optional="False" label="input raw data file " help="(-in)"/>
+    <param name="param_struc_elem_length" type="float" value="3.0" label="Length of the structuring element (should be wider than maximal peak width - see documentation)." help="(-struc_elem_length)"/>
+    <param name="param_struc_elem_unit" type="select" optional="True" value="Thomson" label="Unit of 'struc_elem_length' parameter." help="(-struc_elem_unit)">
+      <option value="Thomson">Thomson</option>
+      <option value="DataPoints">DataPoints</option>
+    </param>
+    <param name="param_method" type="select" optional="True" value="tophat" label="The name of the morphological filter to be applied. If you are unsure, use the default." help="(-method)">
+      <option value="identity">identity</option>
+      <option value="erosion">erosion</option>
+      <option value="dilation">dilation</option>
+      <option value="opening">opening</option>
+      <option value="closing">closing</option>
+      <option value="gradient">gradient</option>
+      <option value="tophat">tophat</option>
+      <option value="bothat">bothat</option>
+      <option value="erosion_simple">erosion_simple</option>
+      <option value="dilation_simple">dilation_simple</option>
+    </param>
+  </inputs>
+  <outputs>
+    <data name="param_out" label="output raw data file " format="mzML"/>
+  </outputs>
+  <help>**What it does**
+
+Removes the baseline from profile spectra using a top-hat filter.
+
+
+For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_BaselineFilter.html
+
+@REFERENCES@
+</help>
+</tool>