--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/AdditiveSeries.xml	Fri Oct 10 18:20:03 2014 -0400
@@ -0,0 +1,49 @@
+<?xml version='1.0' encoding='UTF-8'?>
+<tool id="AdditiveSeries" name="AdditiveSeries" version="1.12.0">
+  <description>Computes an additive series to quantify a peptide in a set of samples.</description>
+  <macros>
+    <token name="@EXECUTABLE@">AdditiveSeries</token>
+    <import>macros.xml</import>
+  </macros>
+  <expand macro="stdio"/>
+  <expand macro="requirements"/>
+  <command>AdditiveSeries
+
+-in ${param_in}
+-out ${param_out}
+-mz_tolerance ${param_mz_tolerance}
+-rt_tolerance ${param_rt_tolerance}
+-concentrations ${param_concentrations}
+-feature_rt ${param_feature_rt}
+-feature_mz ${param_feature_mz}
+-standard_rt ${param_standard_rt}
+-standard_mz ${param_standard_mz}
+-threads \${GALAXY_SLOTS:-24} 
+${param_write_gnuplot_output}
+-plot:out_gp ${param_out_gp}
+</command>
+  <inputs>
+    <param name="param_in" type="data" format="featureXML" optional="False" size="20" label="input files separated by blanks" help="(-in)"/>
+    <param name="param_mz_tolerance" type="float" value="1.0" label="Tolerance in m/z dimension" help="(-mz_tolerance)"/>
+    <param name="param_rt_tolerance" type="float" value="1.0" label="Tolerance in RT dimension" help="(-rt_tolerance)"/>
+    <param name="param_concentrations" type="text" size="20" value="0" label="List of spiked concentrations" help="(-concentrations)"/>
+    <param name="param_feature_rt" type="float" value="-1.0" label="RT position of the feature" help="(-feature_rt)"/>
+    <param name="param_feature_mz" type="float" value="-1.0" label="m/z position of the feature" help="(-feature_mz)"/>
+    <param name="param_standard_rt" type="float" value="-1.0" label="RT position of the standard" help="(-standard_rt)"/>
+    <param name="param_standard_mz" type="float" value="-1.0" label="m/z position of the standard" help="(-standard_mz)"/>
+    <param name="param_write_gnuplot_output" type="boolean" truevalue="-plot:write_gnuplot_output true" falsevalue="-plot:write_gnuplot_output false" checked="false" optional="True" label="Flag that activates the GNUplot output" help="(-write_gnuplot_output)"/>
+    <param name="param_out_gp" type="text" size="20" label="base file name (3 files with different extensions are created)" help="(-out_gp)"/>
+  </inputs>
+  <outputs>
+    <data name="param_out" label="output XML file containg regression line and confidence interval" format="xml"/>
+  </outputs>
+  <help>**What it does**
+
+Computes an additive series to quantify a peptide in a set of samples.
+
+
+For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_AdditiveSeries.html
+
+@REFERENCES@
+</help>
+</tool>