Mercurial > repos > bgruening > openms

comparison macros.xml @ 4:6ead64a594bd draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/openms commit 7a5239910fda9ed90cca286a38855703b40b1b56-dirty
author bgruening
date Wed, 27 Jan 2016 10:06:49 -0500
parents ec62782f6c68
children
comparison
equal deleted inserted replaced
3:ec62782f6c68 4:6ead64a594bd
1 <?xml version='1.0' encoding='UTF-8'?> 1 <?xml version='1.0' encoding='UTF-8'?>
2 <macros> 2 <macros>
3 <xml name="requirements"> 3 <xml name="requirements">
4 <requirements> 4 <requirements>
5 <!-- enable Docker dependency resolving -->
6 <container type="docker">biodckr/openms</container>
5 <requirement type="binary">@EXECUTABLE@</requirement> 7 <requirement type="binary">@EXECUTABLE@</requirement>
6 <requirement type="package" version="1.12">openms</requirement> 8 <requirement type="package" version="1.2">openms</requirement>
9 <requirement type="package">xtandem</requirement>
10 <requirement type="package">pepnovo</requirement>
11 <requirement type="package">fido</requirement>
12 <requirement type="package">msgfplus</requirement>
13 <requirement type="package">myrimatch</requirement>
14 <requirement type="package">omssa</requirement>
7 </requirements> 15 </requirements>
8 </xml> 16 </xml>
9 <xml name="stdio"> 17 <xml name="stdio">
10 <stdio> 18 <stdio>
11 <exit_code range="1:"/> 19 <exit_code range="1:"/>
12 <exit_code range=":-1"/> 20 <exit_code range=":-1"/>
13 <regex match="Error:"/>
14 <regex match="Exception:"/> 21 <regex match="Exception:"/>
15 </stdio> 22 </stdio>
16 </xml> 23 </xml>
17 <token name="@REFERENCES@"> 24 <xml name="references">
18 25 <citations>
19 ------- 26 <citation type="doi">doi:10.1186/1471-2105-9-163</citation>
20 27 </citations>
21 **References** 28 </xml>
22 29 <xml name="advanced_options">
23 If you use this Galaxy tool in work leading to a scientific publication please
24 cite the following papers:
25
26 </token>
27 <xml name="advanced_option">
28 <conditional name="adv_opts"> 30 <conditional name="adv_opts">
29 <param name="adv_opts_selector" type="select" label="Advanced Options"> 31 <param name="adv_opts_selector" type="select" label="Advanced Options">
30 <option value="basic" selected="True">Hide Advanced Options</option> 32 <option value="basic" selected="True">Hide Advanced Options</option>
31 <option value="advanced">Show Advanced Options</option> 33 <option value="advanced">Show Advanced Options</option>
32 </param> 34 </param>
33 <when value="basic" /> 35 <when value="basic"/>
34 <when value="advanced"> 36 <when value="advanced">
35 <yield/> 37 <yield/>
36 </when> 38 </when>
37 </conditional> 39 </conditional>
38 </xml> 40 </xml>