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comparison TransformationEvaluation.xml @ 4:6ead64a594bd draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/openms commit 7a5239910fda9ed90cca286a38855703b40b1b56-dirty
author bgruening
date Wed, 27 Jan 2016 10:06:49 -0500
parents 3d84209d3178
children
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3:ec62782f6c68 4:6ead64a594bd
1 <?xml version='1.0' encoding='UTF-8'?> 1 <?xml version="1.0" encoding="UTF-8"?>
2 <tool id="TransformationEvaluation" name="TransformationEvaluation" version="1.12.0"> 2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
3 <description>Applies a transformation to a range of values</description> 3 <!--Proposed Tool Section: [Utilities]-->
4 <macros> 4 <tool id="TransformationEvaluation" name="TransformationEvaluation" version="2.0.0">
5 <token name="@EXECUTABLE@">TransformationEvaluation</token> 5 <description>Applies a transformation to a range of values</description>
6 <import>macros.xml</import> 6 <macros>
7 </macros> 7 <token name="@EXECUTABLE@">TransformationEvaluation</token>
8 <expand macro="stdio"/> 8 <import>macros.xml</import>
9 <expand macro="requirements"/> 9 </macros>
10 <command>TransformationEvaluation 10 <expand macro="references"/>
11 <expand macro="stdio"/>
12 <expand macro="requirements"/>
13 <command>TransformationEvaluation
11 14
12 -in ${param_in} 15 #if $param_in:
13 -out ${param_out} 16 -in $param_in
14 -min ${param_min} 17 #end if
15 -max ${param_max} 18 #if $param_out:
16 -step ${param_step} 19 -out $param_out
17 -threads \${GALAXY_SLOTS:-24} 20 #end if
21 #if $param_min:
22 -min $param_min
23 #end if
24 #if $param_max:
25 -max $param_max
26 #end if
27 #if $param_step:
28 -step $param_step
29 #end if
30 -threads \${GALAXY_SLOTS:-24}
31 #if $adv_opts.adv_opts_selector=='advanced':
32 #if $adv_opts.param_force:
33 -force
34 #end if
35 #end if
18 </command> 36 </command>
19 <inputs> 37 <inputs>
20 <param name="param_in" type="data" format="" optional="False" label="Input file containing the transformation description" help="(-in)"/> 38 <param format="trafoxml" help="(-in) " label="Input file containing the transformation description" name="param_in" optional="False" type="data"/>
21 <param name="param_min" type="float" value="0.0" label="Minimum value to transform" help="(-min)"/> 39 <param help="(-min) " label="Minimum value to transform" name="param_min" type="float" value="0.0"/>
22 <param name="param_max" type="float" value="0.0" label="Maximum value to transform (if at or below 'min', select a suitable maximum based on the transformation description)" help="(-max)"/> 40 <param help="(-max) " label="Maximum value to transform (if at or below 'min', select a suitable maximum based on the transformation description)" name="param_max" type="float" value="0.0"/>
23 <param name="param_step" type="float" min="0.001" optional="True" value="1.0" label="Step size between 'min' and 'max'" help="(-step)"/> 41 <param help="(-step) " label="Step size between 'min' and 'max'" min="0.001" name="param_step" optional="True" type="float" value="1.0"/>
24 </inputs> 42 <expand macro="advanced_options">
25 <outputs> 43 <param checked="false" falsevalue="" help="(-force) " label="Overwrite tool specific checks" name="param_force" optional="True" truevalue="-force" type="boolean"/>
26 <data name="param_out" label="Output file containing original and transformed values; if empty, output is written to the screen" format="data"/> 44 </expand>
27 </outputs> 45 </inputs>
28 <help>**What it does** 46 <outputs>
29 47 <data format="trafoxml" name="param_out"/>
30 Applies a transformation to a range of values 48 </outputs>
49 <help>Applies a transformation to a range of values
31 50
32 51
33 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_TransformationEvaluation.html 52 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_TransformationEvaluation.html</help>
34 53 </tool>
35 @REFERENCES@
36 </help>
37 </tool>