Mercurial > repos > bgruening > openms
comparison PTPredict.xml @ 0:3d84209d3178 draft
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| author | bgruening |
|---|---|
| date | Fri, 10 Oct 2014 18:20:03 -0400 |
| parents | |
| children | 6ead64a594bd |
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| -1:000000000000 | 0:3d84209d3178 |
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| 1 <?xml version='1.0' encoding='UTF-8'?> | |
| 2 <tool id="PTPredict" name="PTPredict" version="1.12.0"> | |
| 3 <description>predicts the likelihood of peptides to be proteotypic via svm_model which is trained by PTModel</description> | |
| 4 <macros> | |
| 5 <token name="@EXECUTABLE@">PTPredict</token> | |
| 6 <import>macros.xml</import> | |
| 7 </macros> | |
| 8 <expand macro="stdio"/> | |
| 9 <expand macro="requirements"/> | |
| 10 <command>PTPredict | |
| 11 | |
| 12 -in ${param_in} | |
| 13 -out ${param_out} | |
| 14 -svm_model ${param_svm_model} | |
| 15 -max_number_of_peptides ${param_max_number_of_peptides} | |
| 16 -threads \${GALAXY_SLOTS:-24} | |
| 17 </command> | |
| 18 <inputs> | |
| 19 <param name="param_in" type="data" format="idXML" optional="False" label="input file " help="(-in)"/> | |
| 20 <param name="param_svm_model" type="data" format="txt" optional="False" label="svm model in libsvm format (can be produced by PTModel)" help="(-svm_model)"/> | |
| 21 <param name="param_max_number_of_peptides" type="integer" value="100000" label="the maximum number of peptides considered at once (bigger number will lead to faster results but needs more memory).#br#" help="(-max_number_of_peptides)"/> | |
| 22 </inputs> | |
| 23 <outputs> | |
| 24 <data name="param_out" label="output file#br#" format="idXML"/> | |
| 25 </outputs> | |
| 26 <help>**What it does** | |
| 27 | |
| 28 predicts the likelihood of peptides to be proteotypic via svm_model which is trained by PTModel | |
| 29 | |
| 30 | |
| 31 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_PTPredict.html | |
| 32 | |
| 33 @REFERENCES@ | |
| 34 </help> | |
| 35 </tool> |