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comparison MapStatistics.xml @ 0:3d84209d3178 draft

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author bgruening
date Fri, 10 Oct 2014 18:20:03 -0400
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-1:000000000000 0:3d84209d3178
1 <?xml version='1.0' encoding='UTF-8'?>
2 <tool id="MapStatistics" name="MapStatistics" version="1.12.0">
3 <description>Extract extended statistics on the features of a map for quality control.</description>
4 <macros>
5 <token name="@EXECUTABLE@">MapStatistics</token>
6 <import>macros.xml</import>
7 </macros>
8 <expand macro="stdio"/>
9 <expand macro="requirements"/>
10 <command>MapStatistics
11
12 -in ${param_in}
13 -in_type ${param_in_type}
14 -out ${param_out}
15 -n ${param_n}
16 ${param_m}
17 ${param_p}
18 ${param_s}
19 -threads \${GALAXY_SLOTS:-24}
20 </command>
21 <inputs>
22 <param name="param_in" type="data" format="featureXML,consensusXML" optional="False" label="Input file" help="(-in)"/>
23 <param name="param_in_type" type="select" optional="True" label="Input file type -- default: determined from file extension or content" help="(-in_type)">
24 <option value="featureXML">featureXML</option>
25 <option value="consensusXML">consensusXML</option>
26 </param>
27 <param name="param_n" type="integer" min="1" max="100" optional="True" value="4" label="Report separate statistics for each of n RT slices of the map." help="(-n)"/>
28 <param name="param_m" type="boolean" truevalue="-m true" falsevalue="-m false" checked="false" optional="True" label="Show meta information about the whole experiment" help="(-m)"/>
29 <param name="param_p" type="boolean" truevalue="-p true" falsevalue="-p false" checked="false" optional="True" label="Shows data processing information" help="(-p)"/>
30 <param name="param_s" type="boolean" truevalue="-s true" falsevalue="-s false" checked="false" optional="True" label="Computes a summary statistics of intensities, qualities, and widths" help="(-s)"/>
31 </inputs>
32 <outputs>
33 <data name="param_out" label="Optional output txt file. If '-' or left out, the output is written to the command line." format="txt"/>
34 </outputs>
35 <help>**What it does**
36
37 Extract extended statistics on the features of a map for quality control.
38
39
40 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_MapStatistics.html
41
42 @REFERENCES@
43 </help>
44 </tool>