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comparison IDConflictResolver.xml @ 0:3d84209d3178 draft

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author bgruening
date Fri, 10 Oct 2014 18:20:03 -0400
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-1:000000000000 0:3d84209d3178
1 <?xml version='1.0' encoding='UTF-8'?>
2 <tool id="IDConflictResolver" name="IDConflictResolver" version="1.12.0">
3 <description>Resolves ambiguous annotations of features with peptide identifications</description>
4 <macros>
5 <token name="@EXECUTABLE@">IDConflictResolver</token>
6 <import>macros.xml</import>
7 </macros>
8 <expand macro="stdio"/>
9 <expand macro="requirements"/>
10 <command>IDConflictResolver
11
12 -in ${param_in}
13 -out ${param_out}
14 -threads \${GALAXY_SLOTS:-24}
15 </command>
16 <inputs>
17 <param name="param_in" type="data" format="featureXML,consensusXML" optional="False" label="Input file (data annotated with identifications)" help="(-in)"/>
18 </inputs>
19 <outputs>
20 <data name="param_out" label="Output file (data with one peptide identification per feature)" format="consensusXML">
21 <change_format>
22 <when input="param_out_type" value="featureXML" format="featureXML"/>
23 </change_format>
24 </data>
25 </outputs>
26 <help>**What it does**
27
28 Resolves ambiguous annotations of features with peptide identifications
29
30
31 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_IDConflictResolver.html
32
33 @REFERENCES@
34 </help>
35 </tool>