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comparison HighResPrecursorMassCorrector.xml @ 0:3d84209d3178 draft

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author bgruening
date Fri, 10 Oct 2014 18:20:03 -0400
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-1:000000000000 0:3d84209d3178
1 <?xml version='1.0' encoding='UTF-8'?>
2 <tool id="HighResPrecursorMassCorrector" name="HighResPrecursorMassCorrector" version="1.12.0">
3 <description>Corrects the precursor mz determined by the instrument software.</description>
4 <macros>
5 <token name="@EXECUTABLE@">HighResPrecursorMassCorrector</token>
6 <import>macros.xml</import>
7 </macros>
8 <expand macro="stdio"/>
9 <expand macro="requirements"/>
10 <command>HighResPrecursorMassCorrector
11
12 -in ${param_in}
13 -out ${param_out}
14 -out_csv ${param_out_csv}
15 -threads \${GALAXY_SLOTS:-24}
16 </command>
17 <inputs>
18 <param name="param_in" type="data" format="mzML" optional="False" label="input file (centroided data)" help="(-in)"/>
19 </inputs>
20 <outputs>
21 <data name="param_out" label="output file" format="mzML"/>
22 <data name="param_out_csv" label="Optional csv output file containing columns: precursor rt, uncorrected mz, corrected mz, delta mz#br#" format="tabular"/>
23 </outputs>
24 <help>**What it does**
25
26 Corrects the precursor mz determined by the instrument software.
27
28
29 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_HighResPrecursorMassCorrector.html
30
31 @REFERENCES@
32 </help>
33 </tool>