Mercurial > repos > bgruening > numeric_clustering

comparison numeric_clustering.xml @ 1:d645cdee08ed draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/numeric_clustering commit ac9beb7e9c83b0ae811b304eb3085a4b0930f5a0-dirty
author bgruening
date Fri, 01 Jan 2016 10:42:52 -0500
parents 42a2825313e9
children 1d465f2ebfad
comparison
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0:42a2825313e9 1:d645cdee08ed
77 my_class = getattr(sklearn.cluster, "$algorithm_options.selected_algorithm") 77 my_class = getattr(sklearn.cluster, "$algorithm_options.selected_algorithm")
78 cluster_object = my_class() 78 cluster_object = my_class()
79 79
80 params = json.loads( sys.argv[1] ) 80 params = json.loads( sys.argv[1] )
81 cluster_object.set_params(**params) 81 cluster_object.set_params(**params)
82 if $end_column > $start_column: 82 if $end_column >= $start_column:
83 data_matrix = data.values[:, $start_column-1:$end_column] 83 data_matrix = data.values[:, $start_column-1:$end_column]
84 else: 84 else:
85 data_matrix = data.values 85 data_matrix = data.values
86 prediction = cluster_object.fit_predict( data_matrix ) 86 prediction = cluster_object.fit_predict( data_matrix )
87 data['cluster_label'] = prediction 87 data['cluster_label'] = prediction