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comparison numeric_clustering.xml @ 3:6bfbaf81b8f4 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/numeric_clustering commit adf077b912ddebd97b07b947b855cdd2862ed8ef-dirty
author bgruening
date Fri, 01 Jan 2016 13:14:03 -0500
parents 1d465f2ebfad
children 7c1794e0f9c2
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2:1d465f2ebfad 3:6bfbaf81b8f4
34 </param> 34 </param>
35 </macro> 35 </macro>
36 </macros> 36 </macros>
37 <version_command>echo "@VERSION@"</version_command> 37 <version_command>echo "@VERSION@"</version_command>
38 <command><![CDATA[ 38 <command><![CDATA[
39 cat "$cluster_script" >&2
40 &&
39 #import json 41 #import json
40 #set $params = dict() 42 #set $params = dict()
41 #for $key, $value in $algorithm_options.items(): 43 #for $key, $value in $algorithm_options.items():
42 #if not $key.startswith('__') and $key.strip() != 'selected_algorithm' and str($value).strip(): 44 #if not $key.startswith('__') and $key.strip() != 'selected_algorithm' and str($value).strip():
43 #if str($value).strip() == 'false': 45 #if str($value).strip() == 'false':
60 #end if 62 #end if
61 #end for 63 #end for
62 #set $json_string = json.dumps( $params ) 64 #set $json_string = json.dumps( $params )
63 65
64 python "$cluster_script" '$json_string' 66 python "$cluster_script" '$json_string'
65 &&
66 cat "$cluster_script" >&2
67 67
68 ]]> 68 ]]>
69 </command> 69 </command>
70 <configfiles> 70 <configfiles>
71 <configfile name="cluster_script"> 71 <configfile name="cluster_script">