Mercurial > repos > bgruening > molecule_datatypes

diff datatypes_conf.xml @ 4:1a070566e9c6

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author bgruening
date Sat, 11 May 2013 17:09:49 -0400
parents 7cb4c02f61e6
children c5383bd4d006
line wrap: on
line diff
--- a/datatypes_conf.xml	Mon Apr 29 11:59:42 2013 -0400
+++ b/datatypes_conf.xml	Sat May 11 17:09:49 2013 -0400
@@ -9,18 +9,21 @@
             <converter file="mol_to_inchi_converter.xml" target_datatype="inchi"/>
             <converter file="mol_to_mol2_converter.xml" target_datatype="mol2"/>
             <converter file="mol_to_smi_converter.xml" target_datatype="smi"/>
+            <converter file="mol_to_cml_converter.xml" target_datatype="cml"/>
         </datatype>
         <datatype extension="mol2" type="galaxy.datatypes.molecules:MOL2" display_in_upload="False">
             <converter file="mol2_to_inchi_converter.xml" target_datatype="inchi"/>
             <converter file="mol2_to_mol_converter.xml" target_datatype="mol"/>
             <converter file="mol2_to_smi_converter.xml" target_datatype="smi"/>
             <converter file="mol2_to_sdf_converter.xml" target_datatype="sdf"/>
+            <converter file="mol2_to_cml_converter.xml" target_datatype="cml"/>
         </datatype>
         <datatype extension="inchi" type="galaxy.datatypes.molecules:InChI" display_in_upload="True">
             <converter file="inchi_to_mol_converter.xml" target_datatype="mol"/>
             <converter file="inchi_to_mol2_converter.xml" target_datatype="mol2"/>
             <converter file="inchi_to_smi_converter.xml" target_datatype="smi"/>
             <converter file="inchi_to_sdf_converter.xml" target_datatype="sdf"/>
+            <converter file="inchi_to_cml_converter.xml" target_datatype="cml"/>
         </datatype>
         <datatype extension="smi" type="galaxy.datatypes.molecules:SMILES" display_in_upload="True">
             <converter file="smi_to_mol_converter.xml" target_datatype="mol"/>
@@ -28,11 +31,19 @@
             <converter file="smi_to_inchi_converter.xml" target_datatype="inchi"/>
             <converter file="smi_to_sdf_converter.xml" target_datatype="sdf"/>
             <converter file="smi_to_smi_converter.xml" target_datatype="smi"/>
+            <converter file="smi_to_cml_converter.xml" target_datatype="cml"/>
         </datatype>
         <datatype extension="sdf" type="galaxy.datatypes.molecules:SDF" display_in_upload="True">
             <converter file="sdf_to_inchi_converter.xml" target_datatype="inchi"/>
             <converter file="sdf_to_smi_converter.xml" target_datatype="smi"/>
             <converter file="sdf_to_mol2_converter.xml" target_datatype="mol2"/>
+            <converter file="sdf_to_cml_converter.xml" target_datatype="cml"/>
+        </datatype>
+        <datatype extension="cml" type="galaxy.datatypes.molecules:CML" display_in_upload="True">
+            <converter file="cml_to_inchi_converter.xml" target_datatype="inchi"/>
+            <converter file="cml_to_smi_converter.xml" target_datatype="smi"/>
+            <converter file="cml_to_mol2_converter.xml" target_datatype="mol2"/>
+            <converter file="cml_to_sdf_converter.xml" target_datatype="sdf"/>
         </datatype>
         <datatype extension="fps" type="galaxy.datatypes.molecules:FPS" mimetype="text/html" display_in_upload="True" />
         <datatype extension="obfs" type="galaxy.datatypes.molecules:OBFS" mimetype="text/html" display_in_upload="False" />
@@ -45,6 +56,7 @@
         <sniffer type="galaxy.datatypes.molecules:MOL2"/>
         <sniffer type="galaxy.datatypes.molecules:InChI"/>
         <sniffer type="galaxy.datatypes.molecules:FPS"/>
+        <sniffer type="galaxy.datatypes.molecules:CML"/>
         <!-- TODO: see molecules.py <sniffer type="galaxy.datatypes.molecules:SMILES"/>-->
    </sniffers>
 </datatypes>