Mercurial > repos > bgruening > ml_visualization_ex

comparison ml_visualization_ex.xml @ 1:64126fb634b5 draft

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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 02087ce2966cf8b4aac9197a41171e7f986c11d1-dirty"
author bgruening
date Wed, 02 Oct 2019 03:19:36 -0400
parents 6ff2f197bc35
children 1b2f7d4ee4e7
comparison
equal deleted inserted replaced
0:6ff2f197bc35 1:64126fb634b5
33 </configfiles> 33 </configfiles>
34 <inputs> 34 <inputs>
35 <conditional name="plotting_selection"> 35 <conditional name="plotting_selection">
36 <param name="plot_type" type="select" label="Select a plotting type"> 36 <param name="plot_type" type="select" label="Select a plotting type">
37 <option value="learning_curve" selected="true">Learning curve</option> 37 <option value="learning_curve" selected="true">Learning curve</option>
38 <option value="pr_curve">2-class Precison Recall curve</option> 38 <option value="pr_curve">2-class / multpi-label Precison Recall curve</option>
39 <option value="roc_curve">2-class Receiver Operating Characteristic (ROC) curve</option> 39 <option value="roc_curve">2-class / multi-label Receiver Operating Characteristic (ROC) curve</option>
40 <option value="rfecv_gridscores">Number of features vs. Recursive Feature Elimination gridscores with corss-validation</option> 40 <option value="rfecv_gridscores">Number of features vs. Recursive Feature Elimination gridscores with corss-validation</option>
41 <option value="feature_importances">Feature Importances plot</option> 41 <option value="feature_importances">Feature Importances plot</option>
42 <option value="keras_plot_model">keras plot model - plot configuration of a neural network model</option> 42 <option value="keras_plot_model">keras plot model - plot configuration of a neural network model</option>
43 </param> 43 </param>
44 <when value="learning_curve"> 44 <when value="learning_curve">
45 <param name="infile1" type="data" format="tabular" label="Select the dataset containing values for plotting learning curve." help="This dataset should be the output of tool model_validation->learning_curve."/> 45 <param name="infile1" type="data" format="tabular" label="Select the dataset containing values for plotting learning curve." help="This dataset should be the output of tool model_validation->learning_curve."/>
46 <param name="plot_std_err" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="false" label="Whether to plot standard error bar?"/> 46 <param name="plot_std_err" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="false" label="Whether to plot standard error bar?"/>
47 <param name="title" type="text" value="" optional="true" label="Plot title" help="Optional. If change is desired."/> 47 <param name="title" type="text" value="" optional="true" label="Plot title" help="Optional. If change is desired."/>
48 </when> 48 </when>
49 <when value="pr_curve"> 49 <when value="pr_curve">
50 <param name="infile1" type="data" format="tabular" label="Select the dataset containing true labels." help="No headers. Each column corresponds to one class."/> 50 <param name="infile1" type="data" format="tabular" label="Select the dataset containing true labels." help="No headers. For 2-class, single column contains both class labels (e.g. True and False). For multi-label, each column, hot-encoded, corresponds to one label."/>
51 <param name="infile2" type="data" format="tabular" label="Select the dataset containing predicted probabilities." help="No headers. Each column corresponds to one class."/> 51 <param name="infile2" type="data" format="tabular" label="Select the dataset containing predicted probabilities." help="No headers. For 2-class, sinle column or the first column contains scores for the positive label. For multi-label, each column corresponds to one label."/>
52 <param name="pos_label" type="text" value="" optional="true" label="pos_label" help="The label of positive class. If not specified, it will be 1 by default."/> 52 <param name="pos_label" type="text" value="" optional="true" label="pos_label" help="The label of positive class. If not specified, it will be 1 by default."/>
53 <param name="title" type="text" value="" optional="true" label="Plot title" help="Optional. If change is desired."/> 53 <param name="title" type="text" value="" optional="true" label="Plot title" help="Optional. If change is desired."/>
54 </when> 54 </when>
55 <when value="roc_curve"> 55 <when value="roc_curve">
56 <param name="infile1" type="data" format="tabular" label="Select the dataset containing true labels." help="No headers. Each column corresponds to one class."/> 56 <param name="infile1" type="data" format="tabular" label="Select the dataset containing true labels." help="No headers. For 2-class, single column contains both class labels (e.g. True and False). For multi-label, each column, hot-encoded, corresponds to one label."/>
57 <param name="infile2" type="data" format="tabular" label="Select the dataset containing predicted probabilities." help="No headers. Each column corresponds to one class."/> 57 <param name="infile2" type="data" format="tabular" label="Select the dataset containing predicted probabilities." help="No headers. For 2-class, sinle column or the first column contains scores for the positive label. For multi-label, each column corresponds to one label."/>
58 <param name="pos_label" type="text" value="" optional="true" label="pos_label" help="The label of positive class. If not specified, it will be 1 by default."/> 58 <param name="pos_label" type="text" value="" optional="true" label="pos_label" help="The label of positive class. If not specified, it will be 1 by default."/>
59 <param name="drop_intermediate" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="true" label="drop_intermediate" help="Whether to drop some suboptimal thresholds which would not appear on a plotted ROC curve."/> 59 <param name="drop_intermediate" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="true" label="drop_intermediate" help="Whether to drop some suboptimal thresholds which would not appear on a plotted ROC curve."/>
60 <param name="title" type="text" value="" optional="true" label="Plot title" help="Optional. If change is desired."/> 60 <param name="title" type="text" value="" optional="true" label="Plot title" help="Optional. If change is desired."/>
61 </when> 61 </when>
62 <when value="rfecv_gridscores"> 62 <when value="rfecv_gridscores">