Mercurial > repos > bgruening > json2yolosegment
diff json2yolosegment.py @ 0:252fd085940d draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 67e0e1d123bcfffb10bab8cc04ae67259caec557
author | bgruening |
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date | Fri, 13 Jun 2025 11:23:35 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/json2yolosegment.py Fri Jun 13 11:23:35 2025 +0000 @@ -0,0 +1,64 @@ +import argparse +import json +import os + + +def convert_json_to_yolo(input_dir, save_dir, class_names_file): + + with open(class_names_file, 'r') as f: + class_names = [line.strip() for line in f.readlines()] + + class_to_index = {class_name: i for i, class_name in enumerate(class_names)} + + for filename in os.listdir(input_dir): + json_filepath = os.path.join(input_dir, filename) + + with open(json_filepath, 'r') as f: + data = json.load(f) + + image_width = data.get('imageWidth') + image_height = data.get('imageHeight') + if image_width is None or image_height is None: + print(f"Skipping {filename}: missing image dimensions.") + return + + annotations = data.get('shapes', []) + + base, _ = os.path.splitext(filename) + output_file = f"{base}.txt" + output_filepath = os.path.join(save_dir, output_file) + + with open(output_filepath, 'w') as f: + for annotation in annotations: + label = annotation.get('label') + class_index = class_to_index[label] + + points = annotation.get('points', []) + + if not points: + print(f"No points found for annotation '{label}', skipping.") + continue + + x = [point[0] / (image_width - 1) for point in points] + y = [point[1] / (image_height - 1) for point in points] + + segmentation_points = ['{} {}'.format(x[i], y[i]) for i in range(len(x))] + segmentation_points_string = ' '.join(segmentation_points) + line = '{} {}\n'.format(class_index, segmentation_points_string) + f.write(line) + + print(f"Converted annotations saved to: {output_filepath}") + + +def main(): + parser = argparse.ArgumentParser(description="Convert JSON annotations to YOLO segment format.") + parser.add_argument('-i', '--input_dir', type=str, help='Full path of the folder containing AnyLabeling JSON files.') + parser.add_argument('-o', '--save_dir', type=str, help='Path to the directory to save converted YOLO files.') + parser.add_argument('-c', '--class_names_file', type=str, help='Path to the text file containing class names, one per line.') + args = parser.parse_args() + + convert_json_to_yolo(args.input_dir, args.save_dir, args.class_names_file) + + +if __name__ == "__main__": + main()