Mercurial > repos > bgruening > hicexplorer_hicdetectloops

view test-data/cHi-C/chicQualityControl/new_referencepoints.bed_report @ 4:7b5911762303 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit db84cc85222518217286b42262935edd3a49c98e"
author iuc
date Fri, 14 Aug 2020 09:12:07 +0000
parents 9f4340171345
children 9038a0f28855
line wrap: on
line source

# Created with chicQualityControl version 3.4.3
# QC report for matrices: 0_matrix.cool 1_matrix.cool 
#Sparsity threshold for rejection: sparsity <= 0.05 are rejected.

Number of reference points: 43
Number of accepted reference points: 35
Number of rejected reference points: 8
Number of faulty reference points: 0


A faulty reference point is caused by the non-presence of the chromosome in one of the given matrices.
It can also be caused by the non-presence of valid Hi-C reads in a region, especially at the chromosome ends.
Please check the results of hicInfo to validate this for your data.